Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
IQ37_03255TonB-dependent receptor; Derived by automated computational analysis using gene prediction method: Protein Homology. (710 aa)    
Predicted Functional Partners:
IQ37_03250
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.960
IQ37_03265
Secretion protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.848
IQ37_03240
Iron ABC transporter; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily.
 
     0.757
IQ37_03235
Heme ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.756
IQ37_03225
Heme ABC transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.712
IQ37_03245
ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.708
MraW
Methyltransferase type 11; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.705
IQ37_03260
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
   0.607
IQ37_05605
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 
   0.580
IQ37_16680
TonB-dependent receptor; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.548
Your Current Organism:
Chryseobacterium piperi
NCBI taxonomy Id: 558152
Other names: C. piperi, CCUG 57707, Chryseobacterium piperi Strahan et al. 2011 emend. Hahnke et al. 2016, Chryseobacterium sp. CTM, DSM 22249, JCM 15960, KCTC 23267, strain CTM
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