Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
IQ37_03495Secretion protein HlyD; Derived by automated computational analysis using gene prediction method: Protein Homology. (348 aa)    
Predicted Functional Partners:
IQ37_03490
Membrane protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
   0.947
IQ37_05235
Major facilitator transporter; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the major facilitator superfamily.
 
   0.807
IQ37_03500
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
   0.756
IQ37_05245
Transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
   0.748
IQ37_12865
Membrane protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
   0.677
IQ37_05005
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
   0.574
IQ37_11005
RND transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
   0.543
IQ37_14110
RND transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
   0.537
IQ37_18465
Membrane protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
   0.528
IQ37_10945
Acriflavine resistance protein B; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family.
 
 
 0.523
Your Current Organism:
Chryseobacterium piperi
NCBI taxonomy Id: 558152
Other names: C. piperi, CCUG 57707, Chryseobacterium piperi Strahan et al. 2011 emend. Hahnke et al. 2016, Chryseobacterium sp. CTM, DSM 22249, JCM 15960, KCTC 23267, strain CTM
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