Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Co-occurrence
Co-expression
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[Homology]
Score
RecORecombinase RecO; Involved in DNA repair and RecF pathway recombination. (228 aa)    
Predicted Functional Partners:
recR
Recombinase RecR; May play a role in DNA repair. It seems to be involved in an RecBC-independent recombinational process of DNA repair. It may act with RecF and RecO.
   
 
 0.870
IQ37_04420
isoleucyl-tRNA synthetase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.846
IQ37_04410
5'-nucleotidase; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.786
IQ37_04415
5'-nucleotidase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the 5'-nucleotidase family.
       0.786
IQ37_03445
Phosphate starvation protein PhoH; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
  
 0.767
IQ37_08060
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.677
polA
DNA polymerase I; In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity; Belongs to the DNA polymerase type-A family.
     
 0.676
IQ37_19200
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.654
IQ37_06945
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
   
 0.639
IQ37_02500
Cell division protein FtsQ; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
   
 0.623
Your Current Organism:
Chryseobacterium piperi
NCBI taxonomy Id: 558152
Other names: C. piperi, CCUG 57707, Chryseobacterium piperi Strahan et al. 2011 emend. Hahnke et al. 2016, Chryseobacterium sp. CTM, DSM 22249, JCM 15960, KCTC 23267, strain CTM
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