Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
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Co-occurrence
Co-expression
Experiments
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[Homology]
Score
IQ37_04880Membrane protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (229 aa)    
Predicted Functional Partners:
IQ37_04885
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.834
IQ37_13995
Membrane protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.631
LepB
Signal peptidase I; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the peptidase S26 family.
 
  
 0.551
IQ37_04875
Prenyltransferase UbiA; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the UbiA prenyltransferase family.
       0.532
IQ37_04870
FAD-linked oxidase; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.531
IQ37_04860
HAD family hydrolase; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.517
IQ37_04865
3-oxoacyl-ACP reductase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
    0.517
IQ37_12495
Membrane protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.514
IQ37_04850
Cysteine desulfurase; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
   0.501
IQ37_15225
Permease; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 
   0.494
Your Current Organism:
Chryseobacterium piperi
NCBI taxonomy Id: 558152
Other names: C. piperi, CCUG 57707, Chryseobacterium piperi Strahan et al. 2011 emend. Hahnke et al. 2016, Chryseobacterium sp. CTM, DSM 22249, JCM 15960, KCTC 23267, strain CTM
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