STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
IQ37_05970Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (157 aa)    
Predicted Functional Partners:
IQ37_08765
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.653
IQ37_11635
Transcriptional accessory protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.582
IQ37_05965
Polyphosphate:nucleotide phosphotransferase; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.563
valS
valyl-tRNA synthetase; Catalyzes the attachment of valine to tRNA(Val). As ValRS can inadvertently accommodate and process structurally similar amino acids such as threonine, to avoid such errors, it has a 'posttransfer' editing activity that hydrolyzes mischarged Thr-tRNA(Val) in a tRNA- dependent manner; Belongs to the class-I aminoacyl-tRNA synthetase family. ValS type 1 subfamily.
       0.554
IQ37_00720
uroporphyrinogen-III synthase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.542
IQ37_08060
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.522
IQ37_04910
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.503
IQ37_08570
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.495
IQ37_02620
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.477
IQ37_02935
Hypothetical protein; Promotes RNA polymerase assembly. Latches the N- and C- terminal regions of the beta' subunit thereby facilitating its interaction with the beta and alpha subunits.
  
     0.464
Your Current Organism:
Chryseobacterium piperi
NCBI taxonomy Id: 558152
Other names: C. piperi, CCUG 57707, Chryseobacterium piperi Strahan et al. 2011 emend. Hahnke et al. 2016, Chryseobacterium sp. CTM, DSM 22249, JCM 15960, KCTC 23267, strain CTM
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.