STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
IQ37_09310Crp/Fnr family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology. (237 aa)    
Predicted Functional Partners:
IQ37_11975
Cyclic nucleotide-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.762
IQ37_09305
ATPase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.760
IQ37_14730
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.760
panB
3-methyl-2-oxobutanoate hydroxymethyltransferase; Catalyzes the reversible reaction in which hydroxymethyl group from 5,10-methylenetetrahydrofolate is transferred onto alpha- ketoisovalerate to form ketopantoate; Belongs to the PanB family.
       0.613
IQ37_09325
Pseudouridine synthase; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.611
IQ37_09320
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.608
IQ37_17010
Histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 
 0.582
IQ37_09295
Bifunctional cbb3-type cytochrome c oxidase subunit I/II; CcoN/CcoO FixN/FixO; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the heme-copper respiratory oxidase family.
 
  
 0.575
IQ37_09285
Derived by automated computational analysis using gene prediction method: Protein Homology.
 
   
 0.513
IQ37_09270
Cytochrome C biogenesis protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.466
Your Current Organism:
Chryseobacterium piperi
NCBI taxonomy Id: 558152
Other names: C. piperi, CCUG 57707, Chryseobacterium piperi Strahan et al. 2011 emend. Hahnke et al. 2016, Chryseobacterium sp. CTM, DSM 22249, JCM 15960, KCTC 23267, strain CTM
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