STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
IQ37_10180Peptidase U61; Derived by automated computational analysis using gene prediction method: Protein Homology. (309 aa)    
Predicted Functional Partners:
IQ37_10170
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the UPF0102 family.
       0.847
IQ37_10175
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
    0.819
IQ37_10185
Lysine transporter LysE; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.787
DacB-2
Peptidase S13; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  
 0.779
DacB
Peptidase S13; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  
 0.742
rnr
Ribonuclease R; 3'-5' exoribonuclease that releases 5'-nucleoside monophosphates and is involved in maturation of structured RNAs.
       0.610
IQ37_10165
Malonic semialdehyde reductase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the short-chain dehydrogenases/reductases (SDR) family.
       0.565
TsaB
Peptidase M22; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
    0.507
IQ37_10195
Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.
       0.484
IQ37_18645
Glycoside hydrolase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
   
 0.472
Your Current Organism:
Chryseobacterium piperi
NCBI taxonomy Id: 558152
Other names: C. piperi, CCUG 57707, Chryseobacterium piperi Strahan et al. 2011 emend. Hahnke et al. 2016, Chryseobacterium sp. CTM, DSM 22249, JCM 15960, KCTC 23267, strain CTM
Server load: low (16%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.