Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
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[Homology]
Score
IQ37_11430Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (341 aa)    
Predicted Functional Partners:
IQ37_17720
Peptidylprolyl isomerase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 0.875
gyrA
DNA gyrase subunit A; A type II topoisomerase that negatively supercoils closed circular double-stranded (ds) DNA in an ATP-dependent manner to modulate DNA topology and maintain chromosomes in an underwound state. Negative supercoiling favors strand separation, and DNA replication, transcription, recombination and repair, all of which involve strand separation. Also able to catalyze the interconversion of other topological isomers of dsDNA rings, including catenanes and knotted rings. Type II topoisomerases break and join 2 DNA strands simultaneously in an ATP-dependent manner.
  
    0.779
IQ37_16385
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.730
IQ37_07990
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.715
IQ37_00225
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.700
IQ37_14280
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.678
IQ37_04270
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.670
IQ37_02255
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 
 
 0.667
IQ37_04100
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.665
IQ37_11510
Prenyltransferase UbiA; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.652
Your Current Organism:
Chryseobacterium piperi
NCBI taxonomy Id: 558152
Other names: C. piperi, CCUG 57707, Chryseobacterium piperi Strahan et al. 2011 emend. Hahnke et al. 2016, Chryseobacterium sp. CTM, DSM 22249, JCM 15960, KCTC 23267, strain CTM
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