STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
IQ37_12450ATPase AAA; Derived by automated computational analysis using gene prediction method: Protein Homology. (454 aa)    
Predicted Functional Partners:
glpK
Glycerol kinase; Key enzyme in the regulation of glycerol uptake and metabolism. Catalyzes the phosphorylation of glycerol to yield sn- glycerol 3-phosphate; Belongs to the FGGY kinase family.
   
 0.970
IQ37_09900
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
 0.760
IQ37_10565
Protease; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
 0.760
IQ37_18000
TonB-dependent receptor; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.745
IQ37_10915
TonB-dependent receptor; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.740
IQ37_15365
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.738
IQ37_00330
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.704
IQ37_03040
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.699
IQ37_05485
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.654
alaS
alanyl-tRNA synthetase; Catalyzes the attachment of alanine to tRNA(Ala) in a two- step reaction: alanine is first activated by ATP to form Ala-AMP and then transferred to the acceptor end of tRNA(Ala). Also edits incorrectly charged Ser-tRNA(Ala) and Gly-tRNA(Ala) via its editing domain.
  
  0.647
Your Current Organism:
Chryseobacterium piperi
NCBI taxonomy Id: 558152
Other names: C. piperi, CCUG 57707, Chryseobacterium piperi Strahan et al. 2011 emend. Hahnke et al. 2016, Chryseobacterium sp. CTM, DSM 22249, JCM 15960, KCTC 23267, strain CTM
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