STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
IQ37_13600Arginase; Derived by automated computational analysis using gene prediction method: Protein Homology. (356 aa)    
Predicted Functional Partners:
IQ37_13605
Glycosyl transferase family 2; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.783
IQ37_00675
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.709
IQ37_03550
Polyketide cyclase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.703
IQ37_02900
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.698
IQ37_09105
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.690
IQ37_12355
Zinc permease; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.682
topA
DNA topoisomerase I; Releases the supercoiling and torsional tension of DNA, which is introduced during the DNA replication and transcription, by transiently cleaving and rejoining one strand of the DNA duplex. Introduces a single-strand break via transesterification at a target site in duplex DNA. The scissile phosphodiester is attacked by the catalytic tyrosine of the enzyme, resulting in the formation of a DNA- (5'-phosphotyrosyl)-enzyme intermediate and the expulsion of a 3'-OH DNA strand. The free DNA strand then undergoes passage around the unbroken strand, thus removing DNA supe [...]
       0.678
IQ37_08860
Aminodeoxychorismate lyase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 
   0.673
IQ37_01875
Imidazolonepropionase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the metallo-dependent hydrolases superfamily. HutI family.
  
 
 0.664
IQ37_13615
Gliding motility protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.660
Your Current Organism:
Chryseobacterium piperi
NCBI taxonomy Id: 558152
Other names: C. piperi, CCUG 57707, Chryseobacterium piperi Strahan et al. 2011 emend. Hahnke et al. 2016, Chryseobacterium sp. CTM, DSM 22249, JCM 15960, KCTC 23267, strain CTM
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