Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
BamAOuter membrane protein assembly protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (850 aa)    
Predicted Functional Partners:
IQ37_02930
Membrane protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 
 0.975
IQ37_05270
Membrane protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 
 
 0.960
IQ37_13640
Molecular chaperone Skp; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  
 0.941
IQ37_13645
Molecular chaperone Skp; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  
 0.836
lpxC
hydroxymyristoyl-ACP dehydratase; Catalyzes the hydrolysis of UDP-3-O-myristoyl-N- acetylglucosamine to form UDP-3-O-myristoylglucosamine and acetate, the committed step in lipid A biosynthesis; Belongs to the thioester dehydratase family. FabZ subfamily.
 
  
 0.831
RseP
Zinc metalloprotease; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  
 0.829
IQ37_07685
Peptidylprolyl isomerase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 
 0.807
UppS
UDP pyrophosphate synthase; Catalyzes the condensation of isopentenyl diphosphate (IPP) with allylic pyrophosphates generating different type of terpenoids.
  
    0.786
IQ37_13625
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
   0.770
IQ37_10550
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
  
 0.762
Your Current Organism:
Chryseobacterium piperi
NCBI taxonomy Id: 558152
Other names: C. piperi, CCUG 57707, Chryseobacterium piperi Strahan et al. 2011 emend. Hahnke et al. 2016, Chryseobacterium sp. CTM, DSM 22249, JCM 15960, KCTC 23267, strain CTM
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