Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
IQ37_14510RagB/SusD family protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (472 aa)    
Predicted Functional Partners:
IQ37_14505
Membrane protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 
   0.957
IQ37_06445
TonB-dependent receptor; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 
   0.829
IQ37_12360
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 
   0.823
IQ37_00170
Membrane protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 
   0.815
IQ37_13445
Membrane protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 
   0.812
IQ37_14515
Glycerophosphodiester phosphodiesterase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.810
IQ37_14520
Glycerophosphodiester phosphodiesterase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.791
IQ37_13930
TonB-dependent receptor; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 
   0.772
IQ37_14500
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.736
IQ37_12080
TonB-dependent receptor; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.731
Your Current Organism:
Chryseobacterium piperi
NCBI taxonomy Id: 558152
Other names: C. piperi, CCUG 57707, Chryseobacterium piperi Strahan et al. 2011 emend. Hahnke et al. 2016, Chryseobacterium sp. CTM, DSM 22249, JCM 15960, KCTC 23267, strain CTM
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