Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
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[Homology]
Score
IQ37_14800Opacity protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (185 aa)    
Predicted Functional Partners:
IQ37_05640
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.598
IQ37_14325
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.536
IQ37_08130
Polymerase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.470
IQ37_13640
Molecular chaperone Skp; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 
   0.456
IQ37_14795
Opacity protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
    
0.426
IQ37_13645
Molecular chaperone Skp; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 
   0.418
IQ37_12820
TonB-dependent receptor; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.417
IQ37_06460
Membrane protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.408
IQ37_16230
Peptidylprolyl isomerase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 
 
 0.407
secA
Preprotein translocase subunit SecA; Part of the Sec protein translocase complex. Interacts with the SecYEG preprotein conducting channel. Has a central role in coupling the hydrolysis of ATP to the transfer of proteins into and across the cell membrane, serving as an ATP-driven molecular motor driving the stepwise translocation of polypeptide chains across the membrane.
  
 
 
 0.401
Your Current Organism:
Chryseobacterium piperi
NCBI taxonomy Id: 558152
Other names: C. piperi, CCUG 57707, Chryseobacterium piperi Strahan et al. 2011 emend. Hahnke et al. 2016, Chryseobacterium sp. CTM, DSM 22249, JCM 15960, KCTC 23267, strain CTM
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