STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
IQ37_15230Derived by automated computational analysis using gene prediction method: Protein Homology. (592 aa)    
Predicted Functional Partners:
rbfA
Ribosome-binding factor A; One of several proteins that assist in the late maturation steps of the functional core of the 30S ribosomal subunit. Associates with free 30S ribosomal subunits (but not with 30S subunits that are part of 70S ribosomes or polysomes). Required for efficient processing of 16S rRNA. May interact with the 5'-terminal helix region of 16S rRNA.
       0.621
IQ37_15225
Permease; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
    0.617
aroE
AroE; catalyzes the conversion of shikimate to 3-dehydroshikimate; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.599
IQ37_08530
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
    0.532
IQ37_03010
Alpha-amylase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the glycosyl hydrolase 13 family.
  
     0.502
IQ37_15800
Gliding motility protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
    0.487
IQ37_05325
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.479
IQ37_15810
Gliding motility protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
    0.465
IQ37_15645
Penicillin-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.460
IQ37_06455
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
   
 0.453
Your Current Organism:
Chryseobacterium piperi
NCBI taxonomy Id: 558152
Other names: C. piperi, CCUG 57707, Chryseobacterium piperi Strahan et al. 2011 emend. Hahnke et al. 2016, Chryseobacterium sp. CTM, DSM 22249, JCM 15960, KCTC 23267, strain CTM
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