STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
IQ37_15625Permease; Derived by automated computational analysis using gene prediction method: Protein Homology. (485 aa)    
Predicted Functional Partners:
IQ37_00695
Permease; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 
  0.952
BamA
Outer membrane protein assembly protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.739
IQ37_10550
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  
 0.719
IQ37_15620
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.716
IQ37_15360
Glycosyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.705
IQ37_11275
Glycosyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.702
lpxC
hydroxymyristoyl-ACP dehydratase; Catalyzes the hydrolysis of UDP-3-O-myristoyl-N- acetylglucosamine to form UDP-3-O-myristoylglucosamine and acetate, the committed step in lipid A biosynthesis; Belongs to the thioester dehydratase family. FabZ subfamily.
 
  
 0.662
IQ37_09430
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.640
IQ37_15615
Cell division protein FtsK; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.621
IQ37_01085
Rod shape-determining protein MreC; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 
 0.615
Your Current Organism:
Chryseobacterium piperi
NCBI taxonomy Id: 558152
Other names: C. piperi, CCUG 57707, Chryseobacterium piperi Strahan et al. 2011 emend. Hahnke et al. 2016, Chryseobacterium sp. CTM, DSM 22249, JCM 15960, KCTC 23267, strain CTM
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.