STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
IQ37_16165Phosphodiesterase; Derived by automated computational analysis using gene prediction method: Protein Homology. (164 aa)    
Predicted Functional Partners:
IQ37_16160
DNA mismatch repair protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.786
IQ37_16155
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.731
RdgB
Deoxyribonucleotide triphosphate pyrophosphatase; Pyrophosphatase that catalyzes the hydrolysis of nucleoside triphosphates to their monophosphate derivatives, with a high preference for the non-canonical purine nucleotides XTP (xanthosine triphosphate), dITP (deoxyinosine triphosphate) and ITP. Seems to function as a house-cleaning enzyme that removes non-canonical purine nucleotides from the nucleotide pool, thus preventing their incorporation into DNA/RNA and avoiding chromosomal lesions. Belongs to the HAM1 NTPase family.
  
  
 0.665
IQ37_16150
Methyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.612
IQ37_16170
Beta-lactamase; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.534
IQ37_02935
Hypothetical protein; Promotes RNA polymerase assembly. Latches the N- and C- terminal regions of the beta' subunit thereby facilitating its interaction with the beta and alpha subunits.
  
     0.526
IQ37_02345
Ankyrin; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 
 
 0.514
IQ37_08060
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.490
IQ37_07210
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.459
IQ37_17825
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
    
 
 0.446
Your Current Organism:
Chryseobacterium piperi
NCBI taxonomy Id: 558152
Other names: C. piperi, CCUG 57707, Chryseobacterium piperi Strahan et al. 2011 emend. Hahnke et al. 2016, Chryseobacterium sp. CTM, DSM 22249, JCM 15960, KCTC 23267, strain CTM
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