STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
IQ37_17820Transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology. (108 aa)    
Predicted Functional Partners:
IQ37_00720
uroporphyrinogen-III synthase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.573
IQ37_19355
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.568
IQ37_17815
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.517
IQ37_17825
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.517
IQ37_02475
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.487
IQ37_08765
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.477
IQ37_11920
Histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
   0.470
IQ37_06910
TonB-dependent receptor; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.456
IQ37_15345
Phosphohydrolase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
    0.448
IQ37_18410
Collagen-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.408
Your Current Organism:
Chryseobacterium piperi
NCBI taxonomy Id: 558152
Other names: C. piperi, CCUG 57707, Chryseobacterium piperi Strahan et al. 2011 emend. Hahnke et al. 2016, Chryseobacterium sp. CTM, DSM 22249, JCM 15960, KCTC 23267, strain CTM
Server load: low (24%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.