STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SHI42061.1S-formylglutathione hydrolase FrmB. (272 aa)    
Predicted Functional Partners:
SHJ10987.1
Quinol:cytochrome c oxidoreductase iron-sulfur protein precursor.
    
  0.815
SHJ38252.1
Acetyl esterase/lipase.
 
  
 0.658
SHI42019.1
Catechol 2,3-dioxygenase.
       0.537
SHJ15786.1
Threonine dehydrogenase.
   
 
 0.525
SHI42719.1
Lactate dehydrogenase; Belongs to the D-isomer specific 2-hydroxyacid dehydrogenase family.
  
  
 0.512
SHI87314.1
Glutamate synthase (NADPH/NADH) small chain.
   
 
  0.461
SHJ29797.1
Calcineurin-like phosphoesterase superfamily domain-containing protein.
 
  
 0.413
SHJ44814.1
D-lactate dehydrogenase; Belongs to the D-isomer specific 2-hydroxyacid dehydrogenase family.
     
 0.405
Your Current Organism:
Arenibacter nanhaiticus
NCBI taxonomy Id: 558155
Other names: A. nanhaiticus, Arenibacter nanhaiticus Sun et al. 2010, Arenibacter sp. NH36A, CCTCC AB 208315, LMG 24842, LMG:24842, MCCC 1A04137, strain NH36A
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