STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SHI76870.1Patatin-like phospholipase. (298 aa)    
Predicted Functional Partners:
SHI76939.1
Aminopeptidase N.
       0.797
SHI76906.1
Patatin-like phospholipase.
 
    
0.788
SHJ05992.1
Helicase conserved C-terminal domain-containing protein.
  
     0.668
SHI32308.1
Hypothetical protein.
  
     0.569
SHJ01118.1
Helicase conserved C-terminal domain-containing protein.
  
     0.551
SHJ01356.1
Hypothetical protein.
  
     0.522
SHI85089.1
Hypothetical protein.
  
     0.516
SHI94035.1
Hypothetical protein.
  
     0.508
SHJ18208.1
Hypothetical protein.
  
     0.503
SHI36367.1
Hypothetical protein.
  
     0.481
Your Current Organism:
Arenibacter nanhaiticus
NCBI taxonomy Id: 558155
Other names: A. nanhaiticus, Arenibacter nanhaiticus Sun et al. 2010, Arenibacter sp. NH36A, CCTCC AB 208315, LMG 24842, LMG:24842, MCCC 1A04137, strain NH36A
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.