STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SHI90829.1Sugar phosphate isomerase/epimerase. (278 aa)    
Predicted Functional Partners:
SHI90795.1
Predicted oxidoreductase.
 
     0.749
SHJ41237.1
Predicted dehydrogenase.
  
 
  0.646
SHI45273.1
Hydroxypyruvate isomerase.
 
  
  0.594
SHJ34531.1
Predicted dehydrogenase.
 
 
  0.559
SHJ15817.1
Predicted dehydrogenase.
 
 
  0.543
SHI35509.1
Predicted dehydrogenase.
 
    0.497
SHI46335.1
Tat (twin-arginine translocation) pathway signal sequence.
 
    0.484
SHI81876.1
GAF domain-containing protein.
  
     0.453
SHJ34298.1
Cytochrome C oxidase, cbb3-type, subunit III.
  
     0.440
SHI81811.1
Predicted dehydrogenase.
  
 
  0.438
Your Current Organism:
Arenibacter nanhaiticus
NCBI taxonomy Id: 558155
Other names: A. nanhaiticus, Arenibacter nanhaiticus Sun et al. 2010, Arenibacter sp. NH36A, CCTCC AB 208315, LMG 24842, LMG:24842, MCCC 1A04137, strain NH36A
Server load: low (8%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.