STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SHJ12060.1Small conductance mechanosensitive channel. (277 aa)    
Predicted Functional Partners:
gcvP
Glycine dehydrogenase; The glycine cleavage system catalyzes the degradation of glycine. The P protein binds the alpha-amino group of glycine through its pyridoxal phosphate cofactor; CO(2) is released and the remaining methylamine moiety is then transferred to the lipoamide cofactor of the H protein; Belongs to the GcvP family.
   
    0.510
SHJ71666.1
SSU ribosomal protein S6P modification protein.
 
     0.481
SHJ12088.1
Hypothetical protein.
       0.475
SHJ74980.1
NhaP-type Na+/H+ or K+/H+ antiporter; Belongs to the monovalent cation:proton antiporter 2 (CPA2) transporter (TC 2.A.37) family.
 
   
 0.456
SHI49425.1
cation:H+ antiporter.
 
    0.409
SHI82083.1
Trehalose 6-phosphate synthase /trehalose 6-phosphatase.
     
 0.405
Your Current Organism:
Arenibacter nanhaiticus
NCBI taxonomy Id: 558155
Other names: A. nanhaiticus, Arenibacter nanhaiticus Sun et al. 2010, Arenibacter sp. NH36A, CCTCC AB 208315, LMG 24842, LMG:24842, MCCC 1A04137, strain NH36A
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