STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SHJ22375.1Lipid A 3-O-deacylase (PagL). (366 aa)    
Predicted Functional Partners:
SHJ22405.1
Putative auto-transporter adhesin, head GIN domain.
 
     0.909
SHJ73437.1
dTDP-4-dehydrorhamnose reductase; Catalyzes the reduction of dTDP-6-deoxy-L-lyxo-4-hexulose to yield dTDP-L-rhamnose.
  
     0.715
SHI72271.1
Hypothetical protein.
  
     0.682
SHI29952.1
Hypothetical protein.
  
 
   0.650
SHJ73250.1
Hypothetical protein.
  
     0.607
SHI96411.1
Flagellum-specific peptidoglycan hydrolase FlgJ.
  
  
 0.588
SHI48297.1
DNA-binding transcriptional response regulator, NtrC family, contains REC, AAA-type ATPase, and a Fis-type DNA-binding domains.
  
 
 0.586
SHJ02482.1
Response regulator receiver domain-containing protein.
  
 
 0.586
SHJ05384.1
DNA-binding transcriptional response regulator, NtrC family, contains REC, AAA-type ATPase, and a Fis-type DNA-binding domains.
  
 
 0.586
SHJ47507.1
Two-component system, NtrC family, response regulator HydG.
  
 
 0.586
Your Current Organism:
Arenibacter nanhaiticus
NCBI taxonomy Id: 558155
Other names: A. nanhaiticus, Arenibacter nanhaiticus Sun et al. 2010, Arenibacter sp. NH36A, CCTCC AB 208315, LMG 24842, LMG:24842, MCCC 1A04137, strain NH36A
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