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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AIT60336.1Membrane protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (709 aa)    
Predicted Functional Partners:
AIT60337.1
MPSS family PPE41 protein secretion system protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.831
AIT60186.1
Membrane protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
   
 0.794
AIT60192.1
Membrane protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.769
AIT60107.1
3'-5' exonuclease of DNA polymerase III; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.767
AIT60567.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.745
AIT61098.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.744
AIT60187.1
Glycosyl transferase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
   
 0.739
AIT61190.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.739
AIT61354.1
Membrane protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.732
truA
Pseudouridine synthase; Formation of pseudouridine at positions 38, 39 and 40 in the anticodon stem and loop of transfer RNAs.
       0.730
Your Current Organism:
Corynebacterium doosanense
NCBI taxonomy Id: 558173
Other names: C. doosanense CAU 212 = DSM 45436, Corynebacterium doosanense CAU 212, Corynebacterium doosanense CAU 212 = DSM 45436, Corynebacterium doosanense DSM 45436, Corynebacterium doosanense DSM 45436 = CAU 212, Corynebacterium sp. CAU 212
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