STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AIT60506.1DNA-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (734 aa)    
Predicted Functional Partners:
AIT60501.1
Helicase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.936
AIT60502.1
ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.766
AIT60503.1
ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.766
AIT60500.1
Membrane protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.751
AIT60505.1
XRE family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
    0.694
AIT60507.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.693
AIT60504.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.682
AIT61082.1
Proteasomal accessory factor; Derived by automated computational analysis using gene prediction method: Protein Homology.
     
 0.598
AIT60455.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.575
AIT61780.1
Fatty acid-binding protein; May play a role in the intracellular transport of hydrophobic ligands.
  
     0.548
Your Current Organism:
Corynebacterium doosanense
NCBI taxonomy Id: 558173
Other names: C. doosanense CAU 212 = DSM 45436, Corynebacterium doosanense CAU 212, Corynebacterium doosanense CAU 212 = DSM 45436, Corynebacterium doosanense DSM 45436, Corynebacterium doosanense DSM 45436 = CAU 212, Corynebacterium sp. CAU 212
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