Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
AIT60740.1Spermidine synthase; Derived by automated computational analysis using gene prediction method: Protein Homology. (259 aa)    
Predicted Functional Partners:
AIT61106.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.499
AIT61103.1
DNA-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.496
AIT60792.1
Methyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
    0.491
AIT60743.1
ABC transporter ATPase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the ABC transporter superfamily.
  
  
 0.490
AIT61543.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
    0.482
AIT60741.1
ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.441
AIT61891.1
ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 
   0.440
AIT60742.1
Iron ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.430
AIT60738.1
Aldehyde dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the aldehyde dehydrogenase family.
  
 
 0.426
AIT60720.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.405
Your Current Organism:
Corynebacterium doosanense
NCBI taxonomy Id: 558173
Other names: C. doosanense CAU 212 = DSM 45436, Corynebacterium doosanense CAU 212, Corynebacterium doosanense CAU 212 = DSM 45436, Corynebacterium doosanense DSM 45436, Corynebacterium doosanense DSM 45436 = CAU 212, Corynebacterium sp. CAU 212
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