C5DIP9_LACTC protein (Lachancea thermotolerans)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

C5DIP9_LACTC

KLTH0E14212p. (189 aa)

Predicted Functional Partners:

C5DJ35_LACTC

0.912

C5DD86_LACTC

0.907

C5DN41_LACTC

0.907

C5DBL2_LACTC

0.870

C5DKD8_LACTC

0.845

C5DGK9_LACTC

0.838

C5DK17_LACTC

0.831

C5DCJ4_LACTC

0.821

C5DLI8_LACTC

0.820

C5DDM8_LACTC

0.819

Your Current Organism:

Lachancea thermotolerans

NCBI taxonomy Id: 559295
Other names: Kluyveromyces thermotolerans CBS 6340, L. thermotolerans CBS 6340, Lachancea thermotolerans CBS 6340

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
C5DBL2_LACTC	C5DD86_LACTC	C5DBL2	C5DD86	F-actin-capping protein subunit beta; F-actin-capping proteins bind in a Ca(2+)-independent manner to the fast growing ends of actin filaments (barbed end) thereby blocking the exchange of subunits at these ends. Unlike other capping proteins (such as gelsolin and severin), these proteins do not sever actin filaments.	KLTH0B09174p.	0.946
C5DBL2_LACTC	C5DGK9_LACTC	C5DBL2	C5DGK9	F-actin-capping protein subunit beta; F-actin-capping proteins bind in a Ca(2+)-independent manner to the fast growing ends of actin filaments (barbed end) thereby blocking the exchange of subunits at these ends. Unlike other capping proteins (such as gelsolin and severin), these proteins do not sever actin filaments.	F-actin-capping protein subunit alpha; F-actin-capping proteins bind in a Ca(2+)-independent manner to the fast growing ends of actin filaments (barbed end) thereby blocking the exchange of subunits at these ends. Unlike other capping proteins (such as gelsolin and severin), these proteins do not sever actin filaments.	0.999
C5DBL2_LACTC	C5DIP9_LACTC	C5DBL2	C5DIP9	F-actin-capping protein subunit beta; F-actin-capping proteins bind in a Ca(2+)-independent manner to the fast growing ends of actin filaments (barbed end) thereby blocking the exchange of subunits at these ends. Unlike other capping proteins (such as gelsolin and severin), these proteins do not sever actin filaments.	KLTH0E14212p.	0.870
C5DBL2_LACTC	C5DJ35_LACTC	C5DBL2	C5DJ35	F-actin-capping protein subunit beta; F-actin-capping proteins bind in a Ca(2+)-independent manner to the fast growing ends of actin filaments (barbed end) thereby blocking the exchange of subunits at these ends. Unlike other capping proteins (such as gelsolin and severin), these proteins do not sever actin filaments.	KLTH0F13156p.	0.885
C5DBL2_LACTC	C5DN41_LACTC	C5DBL2	C5DN41	F-actin-capping protein subunit beta; F-actin-capping proteins bind in a Ca(2+)-independent manner to the fast growing ends of actin filaments (barbed end) thereby blocking the exchange of subunits at these ends. Unlike other capping proteins (such as gelsolin and severin), these proteins do not sever actin filaments.	KLTH0G13970p; Belongs to the actin family.	0.906
C5DCJ4_LACTC	C5DDM8_LACTC	C5DCJ4	C5DDM8	KLTH0B03542p.	ER membrane protein complex subunit 3; The EMC seems to be required for efficient folding of proteins in the endoplasmic reticulum (ER).	0.991
C5DCJ4_LACTC	C5DIP9_LACTC	C5DCJ4	C5DIP9	KLTH0B03542p.	KLTH0E14212p.	0.821
C5DCJ4_LACTC	C5DK17_LACTC	C5DCJ4	C5DK17	KLTH0B03542p.	KLTH0F01056p.	0.979
C5DCJ4_LACTC	C5DKD8_LACTC	C5DCJ4	C5DKD8	KLTH0B03542p.	KLTH0F03828p.	0.639
C5DCJ4_LACTC	C5DLI8_LACTC	C5DCJ4	C5DLI8	KLTH0B03542p.	ER membrane protein complex subunit 4; Belongs to the EMC4 family.	0.977
C5DD86_LACTC	C5DBL2_LACTC	C5DD86	C5DBL2	KLTH0B09174p.	F-actin-capping protein subunit beta; F-actin-capping proteins bind in a Ca(2+)-independent manner to the fast growing ends of actin filaments (barbed end) thereby blocking the exchange of subunits at these ends. Unlike other capping proteins (such as gelsolin and severin), these proteins do not sever actin filaments.	0.946
C5DD86_LACTC	C5DGK9_LACTC	C5DD86	C5DGK9	KLTH0B09174p.	F-actin-capping protein subunit alpha; F-actin-capping proteins bind in a Ca(2+)-independent manner to the fast growing ends of actin filaments (barbed end) thereby blocking the exchange of subunits at these ends. Unlike other capping proteins (such as gelsolin and severin), these proteins do not sever actin filaments.	0.907
C5DD86_LACTC	C5DIP9_LACTC	C5DD86	C5DIP9	KLTH0B09174p.	KLTH0E14212p.	0.907
C5DD86_LACTC	C5DJ35_LACTC	C5DD86	C5DJ35	KLTH0B09174p.	KLTH0F13156p.	0.988
C5DD86_LACTC	C5DN41_LACTC	C5DD86	C5DN41	KLTH0B09174p.	KLTH0G13970p; Belongs to the actin family.	0.995
C5DDM8_LACTC	C5DCJ4_LACTC	C5DDM8	C5DCJ4	ER membrane protein complex subunit 3; The EMC seems to be required for efficient folding of proteins in the endoplasmic reticulum (ER).	KLTH0B03542p.	0.991
C5DDM8_LACTC	C5DIP9_LACTC	C5DDM8	C5DIP9	ER membrane protein complex subunit 3; The EMC seems to be required for efficient folding of proteins in the endoplasmic reticulum (ER).	KLTH0E14212p.	0.819
C5DDM8_LACTC	C5DK17_LACTC	C5DDM8	C5DK17	ER membrane protein complex subunit 3; The EMC seems to be required for efficient folding of proteins in the endoplasmic reticulum (ER).	KLTH0F01056p.	0.993
C5DDM8_LACTC	C5DKD8_LACTC	C5DDM8	C5DKD8	ER membrane protein complex subunit 3; The EMC seems to be required for efficient folding of proteins in the endoplasmic reticulum (ER).	KLTH0F03828p.	0.692
C5DDM8_LACTC	C5DLI8_LACTC	C5DDM8	C5DLI8	ER membrane protein complex subunit 3; The EMC seems to be required for efficient folding of proteins in the endoplasmic reticulum (ER).	ER membrane protein complex subunit 4; Belongs to the EMC4 family.	0.995