BDCG_01420 protein (Blastomyces dermatitidis)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

BDCG_01420

NLI interacting factor-like phosphatase, variant. (545 aa)

Predicted Functional Partners:

BDCG_09375

0.915

BDCG_01428

0.905

BDCG_04933

0.836

BDCG_02494

0.800

BDCG_03383

0.790

BDCG_07177

0.781

BDCG_07947

0.769

BDCG_08598

0.758

BDCG_01657

0.752

BDCG_07640

0.752

Your Current Organism:

Blastomyces dermatitidis

NCBI taxonomy Id: 559297
Other names: Ajellomyces dermatitidis ER-3, B. dermatitidis ER-3, Blastomyces dermatitidis ER-3

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
BDCG_01420	BDCG_01428	A0A179TYZ6	C5GCT0	NLI interacting factor-like phosphatase, variant.	Protein transport protein Sec61 subunit beta; Necessary for protein translocation in the endoplasmic reticulum.	0.905
BDCG_01420	BDCG_01657	A0A179TYZ6	C5GBG6	NLI interacting factor-like phosphatase, variant.	DNA-directed RNA polymerase I and III subunit RPAC1.	0.752
BDCG_01420	BDCG_02494	A0A179TYZ6	C5GDN7	NLI interacting factor-like phosphatase, variant.	Mitochondrial import inner membrane translocase subunit tim23.	0.800
BDCG_01420	BDCG_03383	A0A179TYZ6	C5GGL8	NLI interacting factor-like phosphatase, variant.	Mitochondrial import inner membrane translocase subunit tim-17.	0.790
BDCG_01420	BDCG_04933	A0A179TYZ6	C5GKA3	NLI interacting factor-like phosphatase, variant.	Nuclear elongation and deformation protein 1.	0.836
BDCG_01420	BDCG_07177	A0A179TYZ6	C5GSC4	NLI interacting factor-like phosphatase, variant.	Mitochondrial import inner membrane translocase subunit tim21.	0.781
BDCG_01420	BDCG_07640	A0A179TYZ6	C5GT99	NLI interacting factor-like phosphatase, variant.	DNA-directed RNA polymerase II subunit RPB3.	0.752
BDCG_01420	BDCG_07947	A0A179TYZ6	C5GTX5	NLI interacting factor-like phosphatase, variant.	Transcription initiation factor TFIIF subunit beta.	0.769
BDCG_01420	BDCG_08598	A0A179TYZ6	C5GVL0	NLI interacting factor-like phosphatase, variant.	DNA-directed RNA polymerase II subunit RPB4.	0.758
BDCG_01420	BDCG_09375	A0A179TYZ6	C5GYD7	NLI interacting factor-like phosphatase, variant.	Transcription initiation factor IIF subunit alpha; TFIIF is a general transcription initiation factor that binds to RNA polymerase II and helps to recruit it to the initiation complex in collaboration with TFIIB. It promotes transcription elongation. Belongs to the TFIIF alpha subunit family.	0.915
BDCG_01428	BDCG_01420	C5GCT0	A0A179TYZ6	Protein transport protein Sec61 subunit beta; Necessary for protein translocation in the endoplasmic reticulum.	NLI interacting factor-like phosphatase, variant.	0.905
BDCG_01657	BDCG_01420	C5GBG6	A0A179TYZ6	DNA-directed RNA polymerase I and III subunit RPAC1.	NLI interacting factor-like phosphatase, variant.	0.752
BDCG_01657	BDCG_07640	C5GBG6	C5GT99	DNA-directed RNA polymerase I and III subunit RPAC1.	DNA-directed RNA polymerase II subunit RPB3.	0.773
BDCG_01657	BDCG_07947	C5GBG6	C5GTX5	DNA-directed RNA polymerase I and III subunit RPAC1.	Transcription initiation factor TFIIF subunit beta.	0.962
BDCG_01657	BDCG_08598	C5GBG6	C5GVL0	DNA-directed RNA polymerase I and III subunit RPAC1.	DNA-directed RNA polymerase II subunit RPB4.	0.978
BDCG_01657	BDCG_09375	C5GBG6	C5GYD7	DNA-directed RNA polymerase I and III subunit RPAC1.	Transcription initiation factor IIF subunit alpha; TFIIF is a general transcription initiation factor that binds to RNA polymerase II and helps to recruit it to the initiation complex in collaboration with TFIIB. It promotes transcription elongation. Belongs to the TFIIF alpha subunit family.	0.957
BDCG_02494	BDCG_01420	C5GDN7	A0A179TYZ6	Mitochondrial import inner membrane translocase subunit tim23.	NLI interacting factor-like phosphatase, variant.	0.800
BDCG_02494	BDCG_03383	C5GDN7	C5GGL8	Mitochondrial import inner membrane translocase subunit tim23.	Mitochondrial import inner membrane translocase subunit tim-17.	0.993
BDCG_02494	BDCG_07177	C5GDN7	C5GSC4	Mitochondrial import inner membrane translocase subunit tim23.	Mitochondrial import inner membrane translocase subunit tim21.	0.982
BDCG_03383	BDCG_01420	C5GGL8	A0A179TYZ6	Mitochondrial import inner membrane translocase subunit tim-17.	NLI interacting factor-like phosphatase, variant.	0.790