BDCG_17208 protein (Blastomyces dermatitidis)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

BDCG_17208

Uncharacterized protein. (114 aa)

Predicted Functional Partners:

BDCG_16102

0.945

BDCG_17209

0.867

BDCG_09312

0.751

BDCG_08367

0.614

BDCG_05788

0.587

BDCG_06669

0.560

BDCG_09268

0.551

BDCG_07388

0.529

BDCG_08126

0.528

BDCG_02865

0.527

Your Current Organism:

Blastomyces dermatitidis

NCBI taxonomy Id: 559297
Other names: Ajellomyces dermatitidis ER-3, B. dermatitidis ER-3, Blastomyces dermatitidis ER-3

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
BDCG_02865	BDCG_17208	C5GDD1	A0A179U5C9	Uncharacterized protein.	Uncharacterized protein.	0.527
BDCG_05788	BDCG_17208	A0A179U5B3	A0A179U5C9	Ubiquitin carboxyl-terminal hydrolase.	Uncharacterized protein.	0.587
BDCG_06669	BDCG_17208	C5GQ22	A0A179U5C9	Derlin; May be involved in the degradation of misfolded endoplasmic reticulum (ER) luminal proteins; Belongs to the derlin family.	Uncharacterized protein.	0.560
BDCG_07388	BDCG_09268	A0A179U5Y7	C5GXP1	ENTH domain-containing protein, variant.	AP-2 complex subunit mu; Belongs to the adaptor complexes medium subunit family.	0.862
BDCG_07388	BDCG_17208	A0A179U5Y7	A0A179U5C9	ENTH domain-containing protein, variant.	Uncharacterized protein.	0.529
BDCG_08126	BDCG_17208	C5GU60	A0A179U5C9	Dynein heavy chain, cytoplasmic.	Uncharacterized protein.	0.528
BDCG_08367	BDCG_17208	C5GW38	A0A179U5C9	Iron-sulfur clusters transporter atm1, mitochondrial.	Uncharacterized protein.	0.614
BDCG_09268	BDCG_07388	C5GXP1	A0A179U5Y7	AP-2 complex subunit mu; Belongs to the adaptor complexes medium subunit family.	ENTH domain-containing protein, variant.	0.862
BDCG_09268	BDCG_17208	C5GXP1	A0A179U5C9	AP-2 complex subunit mu; Belongs to the adaptor complexes medium subunit family.	Uncharacterized protein.	0.551
BDCG_09312	BDCG_16102	C5GY74	A0A179TVE5	Pkinase_fungal domain-containing protein.	Uncharacterized protein.	0.745
BDCG_09312	BDCG_17208	C5GY74	A0A179U5C9	Pkinase_fungal domain-containing protein.	Uncharacterized protein.	0.751
BDCG_16102	BDCG_09312	A0A179TVE5	C5GY74	Uncharacterized protein.	Pkinase_fungal domain-containing protein.	0.745
BDCG_16102	BDCG_17208	A0A179TVE5	A0A179U5C9	Uncharacterized protein.	Uncharacterized protein.	0.945
BDCG_17208	BDCG_02865	A0A179U5C9	C5GDD1	Uncharacterized protein.	Uncharacterized protein.	0.527
BDCG_17208	BDCG_05788	A0A179U5C9	A0A179U5B3	Uncharacterized protein.	Ubiquitin carboxyl-terminal hydrolase.	0.587
BDCG_17208	BDCG_06669	A0A179U5C9	C5GQ22	Uncharacterized protein.	Derlin; May be involved in the degradation of misfolded endoplasmic reticulum (ER) luminal proteins; Belongs to the derlin family.	0.560
BDCG_17208	BDCG_07388	A0A179U5C9	A0A179U5Y7	Uncharacterized protein.	ENTH domain-containing protein, variant.	0.529
BDCG_17208	BDCG_08126	A0A179U5C9	C5GU60	Uncharacterized protein.	Dynein heavy chain, cytoplasmic.	0.528
BDCG_17208	BDCG_08367	A0A179U5C9	C5GW38	Uncharacterized protein.	Iron-sulfur clusters transporter atm1, mitochondrial.	0.614
BDCG_17208	BDCG_09268	A0A179U5C9	C5GXP1	Uncharacterized protein.	AP-2 complex subunit mu; Belongs to the adaptor complexes medium subunit family.	0.551