BDCG_01306 protein (Blastomyces dermatitidis)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

BDCG_01306

Uncharacterized protein. (250 aa)

Predicted Functional Partners:

BDCG_03696

0.728

BDCG_00367

0.684

BDCG_02774

0.672

BDCG_01086

0.669

BDCG_04760

0.665

BDCG_01242

0.661

BDCG_05113

0.654

BDCG_16764

0.648

BDCG_02318

0.646

BDCG_00368

0.645

Your Current Organism:

Blastomyces dermatitidis

NCBI taxonomy Id: 559297
Other names: Ajellomyces dermatitidis ER-3, B. dermatitidis ER-3, Blastomyces dermatitidis ER-3

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
BDCG_00367	BDCG_01306	C5G731	C5G6N9	SMN domain-containing protein.	Uncharacterized protein.	0.684
BDCG_00367	BDCG_02774	C5G731	C5GEY9	SMN domain-containing protein.	Small nuclear ribonucleoprotein Sm D1; Involved in pre-mRNA splicing. Binds snRNA U1, U2, U4 and U5 which contain a highly conserved structural motif called the Sm binding site; Belongs to the snRNP core protein family.	0.981
BDCG_00367	BDCG_05113	C5G731	C5GL79	SMN domain-containing protein.	Small nuclear ribonucleoprotein Sm D2.	0.976
BDCG_00368	BDCG_01306	C5G732	C5G6N9	Uncharacterized protein.	Uncharacterized protein.	0.645
BDCG_00368	BDCG_16764	C5G732	A0A179TYB3	Uncharacterized protein.	ANK_REP_REGION domain-containing protein.	0.748
BDCG_01086	BDCG_01242	C5GA75	C5G6H3	Crossover junction endonuclease MUS81.	DNA polymerase.	0.798
BDCG_01086	BDCG_01306	C5GA75	C5G6N9	Crossover junction endonuclease MUS81.	Uncharacterized protein.	0.669
BDCG_01086	BDCG_02318	C5GA75	C5GB44	Crossover junction endonuclease MUS81.	DNA excision repair protein ERCC-4.	0.957
BDCG_01242	BDCG_01086	C5G6H3	C5GA75	DNA polymerase.	Crossover junction endonuclease MUS81.	0.798
BDCG_01242	BDCG_01306	C5G6H3	C5G6N9	DNA polymerase.	Uncharacterized protein.	0.661
BDCG_01242	BDCG_02318	C5G6H3	C5GB44	DNA polymerase.	DNA excision repair protein ERCC-4.	0.703
BDCG_01242	BDCG_03696	C5G6H3	C5GHI1	DNA polymerase.	DNA polymerase delta subunit 2.	0.999
BDCG_01242	BDCG_16764	C5G6H3	A0A179TYB3	DNA polymerase.	ANK_REP_REGION domain-containing protein.	0.568
BDCG_01306	BDCG_00367	C5G6N9	C5G731	Uncharacterized protein.	SMN domain-containing protein.	0.684
BDCG_01306	BDCG_00368	C5G6N9	C5G732	Uncharacterized protein.	Uncharacterized protein.	0.645
BDCG_01306	BDCG_01086	C5G6N9	C5GA75	Uncharacterized protein.	Crossover junction endonuclease MUS81.	0.669
BDCG_01306	BDCG_01242	C5G6N9	C5G6H3	Uncharacterized protein.	DNA polymerase.	0.661
BDCG_01306	BDCG_02318	C5G6N9	C5GB44	Uncharacterized protein.	DNA excision repair protein ERCC-4.	0.646
BDCG_01306	BDCG_02774	C5G6N9	C5GEY9	Uncharacterized protein.	Small nuclear ribonucleoprotein Sm D1; Involved in pre-mRNA splicing. Binds snRNA U1, U2, U4 and U5 which contain a highly conserved structural motif called the Sm binding site; Belongs to the snRNP core protein family.	0.672
BDCG_01306	BDCG_03696	C5G6N9	C5GHI1	Uncharacterized protein.	DNA polymerase delta subunit 2.	0.728