STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
BDCG_00047Adenosinetriphosphatase. (1225 aa)    
Predicted Functional Partners:
BDCG_05981
Pre-mRNA-splicing factor slu7.
    
 0.971
BDCG_08764
mRNA splicing factor.
   
 0.971
BDCG_04684
Prp18 domain-containing protein, variant.
    
 0.970
BDCG_06803
ATP-dependent RNA helicase SUB2.
    
 0.966
BDCG_01540
Pre-mRNA-splicing factor cwc22.
   
 0.965
BDCG_05752
Pre-mRNA-splicing factor syf2.
    
 0.963
BDCG_06674
Pre-mRNA-splicing factor CWC21.
    
 0.951
BDCG_03823
U2 small nuclear ribonucleoprotein B.
    
 0.949
BDCG_02774
Small nuclear ribonucleoprotein Sm D1; Involved in pre-mRNA splicing. Binds snRNA U1, U2, U4 and U5 which contain a highly conserved structural motif called the Sm binding site; Belongs to the snRNP core protein family.
    
 0.948
BDCG_05113
Small nuclear ribonucleoprotein Sm D2.
   
 0.948
Your Current Organism:
Blastomyces dermatitidis
NCBI taxonomy Id: 559297
Other names: Ajellomyces dermatitidis ER-3, B. dermatitidis ER-3, Blastomyces dermatitidis ER-3
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.