STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
BDCG_00049Ribosome biogenesis protein Urb1. (1130 aa)    
Predicted Functional Partners:
BDCG_06187
rRNA biogenesis protein RRP5.
   
 
 0.941
BDCG_02135
Urb2 domain-containing protein.
   
 
 0.927
BDCG_06662
U3 small nucleolar RNA-associated protein 10.
   
 
 0.894
NAT10
RNA cytidine acetyltransferase; RNA cytidine acetyltransferase with specificity toward both 18S rRNA and tRNAs. Catalyzes the formation of N(4)-acetylcytidine (ac4C) in 18S rRNA. Required for early nucleolar cleavages of precursor rRNA at sites A0, A1 and A2 during 18S rRNA synthesis. Catalyzes the formation of ac4C in serine and leucine tRNAs. Requires the tRNA- binding adapter protein TAN1 for full tRNA acetyltransferase activity but not for 18S rRNA acetylation.
   
   0.867
BDCG_04439
Periodic tryptophan protein 2.
   
  
 0.855
BDCG_07682
HEAT repeat protein.
   
  
 0.855
BDCG_03519
ATP-dependent RNA helicase MAK5; Belongs to the DEAD box helicase family.
   
 
 0.852
BDCG_01010
DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
   
    0.846
BDCG_07376
Small nucleolar ribonucleoprotein complex subunit.
   
    0.843
BDCG_06765
Elongation factor 3.
   
   0.841
Your Current Organism:
Blastomyces dermatitidis
NCBI taxonomy Id: 559297
Other names: Ajellomyces dermatitidis ER-3, B. dermatitidis ER-3, Blastomyces dermatitidis ER-3
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