BDCG_00703 protein (Blastomyces dermatitidis)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

BDCG_00703

Cyclin; Belongs to the cyclin family. (683 aa)

Predicted Functional Partners:

BDCG_05339

0.992

BDCG_04429

0.974

BDCG_04937

0.955

BDCG_03116

0.875

BDCG_02180

0.856

BDCG_02581

0.830

BDCG_17185

0.820

BDCG_07883

0.818

BDCG_03874

0.816

BDCG_06074

0.814

Your Current Organism:

Blastomyces dermatitidis

NCBI taxonomy Id: 559297
Other names: Ajellomyces dermatitidis ER-3, B. dermatitidis ER-3, Blastomyces dermatitidis ER-3

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
BDCG_00703	BDCG_02180	C5G7B6	C5GAU9	Cyclin; Belongs to the cyclin family.	Transcription elongation factor SPT4; The SPT4-SPT5 complex mediates both activation and inhibition of transcription elongation, and plays a role in pre-mRNA processing. This complex seems to be important for the stability of the RNA polymerase II elongation machinery on the chromatin template but not for the inherent ability of this machinery to translocate down the gene.	0.856
BDCG_00703	BDCG_02581	C5G7B6	C5GDX3	Cyclin; Belongs to the cyclin family.	CTD kinase subunit gamma.	0.830
BDCG_00703	BDCG_03116	C5G7B6	C5GDG5	Cyclin; Belongs to the cyclin family.	Transcription elongation factor SPT5; The SPT4-SPT5 complex mediates both activation and inhibition of transcription elongation, and plays a role in pre-mRNA processing. This complex seems to be important for the stability of the RNA polymerase II elongation machinery on the chromatin template but not for the inherent ability of this machinery to translocate down the gene.	0.875
BDCG_00703	BDCG_03874	C5G7B6	A0A179U1W9	Cyclin; Belongs to the cyclin family.	CMGC/CDK/CDK7 protein kinase; Belongs to the protein kinase superfamily.	0.816
BDCG_00703	BDCG_04429	C5G7B6	C5GI43	Cyclin; Belongs to the cyclin family.	CMGC/CDK/CRK7 protein kinase.	0.974
BDCG_00703	BDCG_04937	C5G7B6	C5GKA7	Cyclin; Belongs to the cyclin family.	DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	0.955
BDCG_00703	BDCG_05339	C5G7B6	C5GM11	Cyclin; Belongs to the cyclin family.	CMGC/CDK protein kinase.	0.992
BDCG_00703	BDCG_06074	C5G7B6	C5GMQ6	Cyclin; Belongs to the cyclin family.	DNA damage-binding protein 1.	0.814
BDCG_00703	BDCG_07883	C5G7B6	C5GUR7	Cyclin; Belongs to the cyclin family.	Cyclin Ccl1; Belongs to the cyclin family.	0.818
BDCG_00703	BDCG_17185	C5G7B6	A0A179U2Z6	Cyclin; Belongs to the cyclin family.	Uncharacterized protein; Belongs to the cyclin family.	0.820
BDCG_02180	BDCG_00703	C5GAU9	C5G7B6	Transcription elongation factor SPT4; The SPT4-SPT5 complex mediates both activation and inhibition of transcription elongation, and plays a role in pre-mRNA processing. This complex seems to be important for the stability of the RNA polymerase II elongation machinery on the chromatin template but not for the inherent ability of this machinery to translocate down the gene.	Cyclin; Belongs to the cyclin family.	0.856
BDCG_02180	BDCG_03116	C5GAU9	C5GDG5	Transcription elongation factor SPT4; The SPT4-SPT5 complex mediates both activation and inhibition of transcription elongation, and plays a role in pre-mRNA processing. This complex seems to be important for the stability of the RNA polymerase II elongation machinery on the chromatin template but not for the inherent ability of this machinery to translocate down the gene.	Transcription elongation factor SPT5; The SPT4-SPT5 complex mediates both activation and inhibition of transcription elongation, and plays a role in pre-mRNA processing. This complex seems to be important for the stability of the RNA polymerase II elongation machinery on the chromatin template but not for the inherent ability of this machinery to translocate down the gene.	0.998
BDCG_02180	BDCG_03874	C5GAU9	A0A179U1W9	Transcription elongation factor SPT4; The SPT4-SPT5 complex mediates both activation and inhibition of transcription elongation, and plays a role in pre-mRNA processing. This complex seems to be important for the stability of the RNA polymerase II elongation machinery on the chromatin template but not for the inherent ability of this machinery to translocate down the gene.	CMGC/CDK/CDK7 protein kinase; Belongs to the protein kinase superfamily.	0.834
BDCG_02180	BDCG_04429	C5GAU9	C5GI43	Transcription elongation factor SPT4; The SPT4-SPT5 complex mediates both activation and inhibition of transcription elongation, and plays a role in pre-mRNA processing. This complex seems to be important for the stability of the RNA polymerase II elongation machinery on the chromatin template but not for the inherent ability of this machinery to translocate down the gene.	CMGC/CDK/CRK7 protein kinase.	0.785
BDCG_02180	BDCG_04937	C5GAU9	C5GKA7	Transcription elongation factor SPT4; The SPT4-SPT5 complex mediates both activation and inhibition of transcription elongation, and plays a role in pre-mRNA processing. This complex seems to be important for the stability of the RNA polymerase II elongation machinery on the chromatin template but not for the inherent ability of this machinery to translocate down the gene.	DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	0.996
BDCG_02180	BDCG_05339	C5GAU9	C5GM11	Transcription elongation factor SPT4; The SPT4-SPT5 complex mediates both activation and inhibition of transcription elongation, and plays a role in pre-mRNA processing. This complex seems to be important for the stability of the RNA polymerase II elongation machinery on the chromatin template but not for the inherent ability of this machinery to translocate down the gene.	CMGC/CDK protein kinase.	0.845
BDCG_02180	BDCG_07883	C5GAU9	C5GUR7	Transcription elongation factor SPT4; The SPT4-SPT5 complex mediates both activation and inhibition of transcription elongation, and plays a role in pre-mRNA processing. This complex seems to be important for the stability of the RNA polymerase II elongation machinery on the chromatin template but not for the inherent ability of this machinery to translocate down the gene.	Cyclin Ccl1; Belongs to the cyclin family.	0.685
BDCG_02180	BDCG_17185	C5GAU9	A0A179U2Z6	Transcription elongation factor SPT4; The SPT4-SPT5 complex mediates both activation and inhibition of transcription elongation, and plays a role in pre-mRNA processing. This complex seems to be important for the stability of the RNA polymerase II elongation machinery on the chromatin template but not for the inherent ability of this machinery to translocate down the gene.	Uncharacterized protein; Belongs to the cyclin family.	0.753
BDCG_02581	BDCG_00703	C5GDX3	C5G7B6	CTD kinase subunit gamma.	Cyclin; Belongs to the cyclin family.	0.830
BDCG_02581	BDCG_03874	C5GDX3	A0A179U1W9	CTD kinase subunit gamma.	CMGC/CDK/CDK7 protein kinase; Belongs to the protein kinase superfamily.	0.404