STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
BDCG_00334Protein transporter SEC13; Belongs to the WD repeat SEC13 family. (307 aa)    
Predicted Functional Partners:
BDCG_02713
Protein transporter SEC31.
    
 0.999
BDCG_08173
Nucleoporin SONB.
    
 0.999
BDCG_09504
Nuclear pore complex subunit Nup133.
    
 0.999
BDCG_01860
Nuclear pore complex protein Nup85; Functions as a component of the nuclear pore complex (NPC).
    
 0.998
BDCG_06435
Nuclear pore protein; Belongs to the WD repeat SEC13 family.
    
0.998
BDCG_08448
Nuclear pore complex protein; Functions as a component of the nuclear pore complex (NPC).
   
 0.998
BDCG_01499
Protein transport protein SEC23; Component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). The coat has two main functions, the physical deformation of the endoplasmic reticulum membrane into vesicles and the selection of cargo molecules; Belongs to the SEC23/SEC24 family. SEC23 subfamily.
   
 0.997
BDCG_03086
Sec23/Sec24 family protein.
   
 0.997
BDCG_08376
Protein transporter SEC24.
   
 0.997
BDCG_00518
Ubiquitin-protein ligase E3.
    
 0.996
Your Current Organism:
Blastomyces dermatitidis
NCBI taxonomy Id: 559297
Other names: Ajellomyces dermatitidis ER-3, B. dermatitidis ER-3, Blastomyces dermatitidis ER-3
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