STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
BDCG_02026NIF domain-containing protein. (518 aa)    
Predicted Functional Partners:
BDCG_04933
Nuclear elongation and deformation protein 1.
    
 0.962
BDCG_07520
Uncharacterized protein.
    
 0.948
BDCG_09375
Transcription initiation factor IIF subunit alpha; TFIIF is a general transcription initiation factor that binds to RNA polymerase II and helps to recruit it to the initiation complex in collaboration with TFIIB. It promotes transcription elongation. Belongs to the TFIIF alpha subunit family.
    
 0.915
BDCG_03274
Uncharacterized protein.
    
 0.862
BDCG_02494
Mitochondrial import inner membrane translocase subunit tim23.
    
 0.800
BDCG_03383
Mitochondrial import inner membrane translocase subunit tim-17.
   
 0.790
BDCG_07177
Mitochondrial import inner membrane translocase subunit tim21.
    
 0.781
BDCG_07947
Transcription initiation factor TFIIF subunit beta.
    
 0.769
BDCG_08598
DNA-directed RNA polymerase II subunit RPB4.
    
 0.758
BDCG_01657
DNA-directed RNA polymerase I and III subunit RPAC1.
    
 0.752
Your Current Organism:
Blastomyces dermatitidis
NCBI taxonomy Id: 559297
Other names: Ajellomyces dermatitidis ER-3, B. dermatitidis ER-3, Blastomyces dermatitidis ER-3
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