BDCG_02864 protein (Blastomyces dermatitidis)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

BDCG_02864

HIT finger domain-containing protein. (224 aa)

Predicted Functional Partners:

BDCG_08091

0.914

BDCG_08410

0.717

BDCG_07282

0.696

BDCG_03996

0.633

BDCG_09004

0.529

BDCG_09007

0.479

BDCG_08205

0.458

BDCG_05655

0.444

BDCG_01881

0.443

BDCG_17500

0.431

Your Current Organism:

Blastomyces dermatitidis

NCBI taxonomy Id: 559297
Other names: Ajellomyces dermatitidis ER-3, B. dermatitidis ER-3, Blastomyces dermatitidis ER-3

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
BDCG_01881	BDCG_02864	C5GBZ8	C5GDD0	U5 snRNP complex subunit.	HIT finger domain-containing protein.	0.443
BDCG_01881	BDCG_03996	C5GBZ8	C5GIT6	U5 snRNP complex subunit.	Elongation factor 2.	0.998
BDCG_01881	BDCG_07282	C5GBZ8	C5GSM9	U5 snRNP complex subunit.	AAR2 domain-containing protein.	0.611
BDCG_01881	BDCG_09004	C5GBZ8	C5GXE4	U5 snRNP complex subunit.	Regulatory factor Sgt1.	0.519
BDCG_02864	BDCG_01881	C5GDD0	C5GBZ8	HIT finger domain-containing protein.	U5 snRNP complex subunit.	0.443
BDCG_02864	BDCG_03996	C5GDD0	C5GIT6	HIT finger domain-containing protein.	Elongation factor 2.	0.633
BDCG_02864	BDCG_05655	C5GDD0	C5GKR6	HIT finger domain-containing protein.	RuvB-like helicase; DNA helicase participates in several chromatin remodeling complexes, including the SWR1 and the INO80 complexes.	0.444
BDCG_02864	BDCG_07282	C5GDD0	C5GSM9	HIT finger domain-containing protein.	AAR2 domain-containing protein.	0.696
BDCG_02864	BDCG_08091	C5GDD0	C5GU25	HIT finger domain-containing protein.	CCCH zinc finger protein.	0.914
BDCG_02864	BDCG_08205	C5GDD0	C5GV23	HIT finger domain-containing protein.	RuvB-like helicase; DNA helicase participates in several chromatin remodeling complexes, including the SWR1 and the INO80 complexes.	0.458
BDCG_02864	BDCG_08410	C5GDD0	C5GVK0	HIT finger domain-containing protein.	Spindle pole body component, variant.	0.717
BDCG_02864	BDCG_09004	C5GDD0	C5GXE4	HIT finger domain-containing protein.	Regulatory factor Sgt1.	0.529
BDCG_02864	BDCG_09007	C5GDD0	C5GXE7	HIT finger domain-containing protein.	Prefoldin beta subunit.	0.479
BDCG_02864	BDCG_17500	C5GDD0	A0A179U5W7	HIT finger domain-containing protein.	GLUE N-terminal domain-containing protein.	0.431
BDCG_03996	BDCG_01881	C5GIT6	C5GBZ8	Elongation factor 2.	U5 snRNP complex subunit.	0.998
BDCG_03996	BDCG_02864	C5GIT6	C5GDD0	Elongation factor 2.	HIT finger domain-containing protein.	0.633
BDCG_03996	BDCG_05655	C5GIT6	C5GKR6	Elongation factor 2.	RuvB-like helicase; DNA helicase participates in several chromatin remodeling complexes, including the SWR1 and the INO80 complexes.	0.598
BDCG_03996	BDCG_07282	C5GIT6	C5GSM9	Elongation factor 2.	AAR2 domain-containing protein.	0.949
BDCG_03996	BDCG_08205	C5GIT6	C5GV23	Elongation factor 2.	RuvB-like helicase; DNA helicase participates in several chromatin remodeling complexes, including the SWR1 and the INO80 complexes.	0.442
BDCG_03996	BDCG_09004	C5GIT6	C5GXE4	Elongation factor 2.	Regulatory factor Sgt1.	0.644