STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
BDCG_03023Rick_17kDa_Anti domain-containing protein. (201 aa)    
Predicted Functional Partners:
BDCG_03247
DNA binding protein SART-1.
   
 
 0.859
BDCG_16769
PWI domain-containing protein.
   
 0.854
BDCG_04217
Uncharacterized protein.
   
 0.854
BDCG_05068
U1 small nuclear ribonucleoprotein 70kDa.
   
 
 0.846
BDCG_04623
WD domain-containing protein, variant 1.
   
 0.839
BDCG_00445
U1 small nuclear ribonucleoprotein C; Component of the spliceosomal U1 snRNP, which is essential for recognition of the pre-mRNA 5' splice-site and the subsequent assembly of the spliceosome. U1-C is directly involved in initial 5' splice-site recognition for both constitutive and regulated alternative splicing. The interaction with the 5' splice-site seems to precede base-pairing between the pre-mRNA and the U1 snRNA. Stimulates commitment or early (E) complex formation by stabilizing the base pairing of the 5' end of the U1 snRNA and the 5' splice-site region.
   
 
 0.839
BDCG_03510
U1 snRNP splicing complex subunit.
   
 0.839
BDCG_05484
Formin binding protein.
   
 
 0.826
BDCG_04096
U2 small nuclear ribonucleoprotein A.
   
 
 0.819
BDCG_05512
Pre-mRNA-processing ATP-dependent RNA helicase PRP5.
   
 0.818
Your Current Organism:
Blastomyces dermatitidis
NCBI taxonomy Id: 559297
Other names: Ajellomyces dermatitidis ER-3, B. dermatitidis ER-3, Blastomyces dermatitidis ER-3
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.