BDCG_04325 protein (Blastomyces dermatitidis)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

BDCG_04325

Uncharacterized protein. (602 aa)

Predicted Functional Partners:

BDCG_01207

0.461

BDCG_07090

0.431

BDCG_07972

0.426

COQ3

0.425

BDCG_00731

0.418

BDCG_03766

0.418

BDCG_00692

0.418

BDCG_00820

0.418

BDCG_03411

0.418

BDCG_07107

0.418

Your Current Organism:

Blastomyces dermatitidis

NCBI taxonomy Id: 559297
Other names: Ajellomyces dermatitidis ER-3, B. dermatitidis ER-3, Blastomyces dermatitidis ER-3

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
BDCG_00692	BDCG_04325	C5G7A5	C5GHT9	AGC/RSK protein kinase.	Uncharacterized protein.	0.418
BDCG_00692	BDCG_07090	C5G7A5	C5GS37	AGC/RSK protein kinase.	ATP synthase subunit beta; Produces ATP from ADP in the presence of a proton gradient across the membrane.	0.548
BDCG_00692	BDCG_07972	C5G7A5	C5GU00	AGC/RSK protein kinase.	ATP synthase subunit alpha; Produces ATP from ADP in the presence of a proton gradient across the membrane.	0.494
BDCG_00731	BDCG_04325	A0A179TWZ8	C5GHT9	Non-specific serine/threonine protein kinase.	Uncharacterized protein.	0.418
BDCG_00731	BDCG_07090	A0A179TWZ8	C5GS37	Non-specific serine/threonine protein kinase.	ATP synthase subunit beta; Produces ATP from ADP in the presence of a proton gradient across the membrane.	0.548
BDCG_00731	BDCG_07972	A0A179TWZ8	C5GU00	Non-specific serine/threonine protein kinase.	ATP synthase subunit alpha; Produces ATP from ADP in the presence of a proton gradient across the membrane.	0.494
BDCG_00820	BDCG_04325	C5G9X8	C5GHT9	F-type H+-transporting ATPase subunit H.	Uncharacterized protein.	0.418
BDCG_00820	BDCG_07090	C5G9X8	C5GS37	F-type H+-transporting ATPase subunit H.	ATP synthase subunit beta; Produces ATP from ADP in the presence of a proton gradient across the membrane.	0.941
BDCG_00820	BDCG_07972	C5G9X8	C5GU00	F-type H+-transporting ATPase subunit H.	ATP synthase subunit alpha; Produces ATP from ADP in the presence of a proton gradient across the membrane.	0.938
BDCG_01207	BDCG_04325	C5GAB1	C5GHT9	Epoxide hydrolase.	Uncharacterized protein.	0.461
BDCG_01207	BDCG_07090	C5GAB1	C5GS37	Epoxide hydrolase.	ATP synthase subunit beta; Produces ATP from ADP in the presence of a proton gradient across the membrane.	0.493
BDCG_01207	BDCG_07972	C5GAB1	C5GU00	Epoxide hydrolase.	ATP synthase subunit alpha; Produces ATP from ADP in the presence of a proton gradient across the membrane.	0.506
BDCG_01207	COQ3	C5GAB1	C5GG69	Epoxide hydrolase.	Ubiquinone biosynthesis O-methyltransferase, mitochondrial; O-methyltransferase that catalyzes the 2 O-methylation steps in the ubiquinone biosynthetic pathway; Belongs to the class I-like SAM-binding methyltransferase superfamily. UbiG/COQ3 family.	0.600
BDCG_03411	BDCG_04325	C5GGP6	C5GHT9	AGC/YANK protein kinase, variant.	Uncharacterized protein.	0.418
BDCG_03411	BDCG_07090	C5GGP6	C5GS37	AGC/YANK protein kinase, variant.	ATP synthase subunit beta; Produces ATP from ADP in the presence of a proton gradient across the membrane.	0.541
BDCG_03411	BDCG_07972	C5GGP6	C5GU00	AGC/YANK protein kinase, variant.	ATP synthase subunit alpha; Produces ATP from ADP in the presence of a proton gradient across the membrane.	0.493
BDCG_03766	BDCG_04325	A0A179TYC0	C5GHT9	AGC/AKT protein kinase, variant 1.	Uncharacterized protein.	0.418
BDCG_03766	BDCG_07090	A0A179TYC0	C5GS37	AGC/AKT protein kinase, variant 1.	ATP synthase subunit beta; Produces ATP from ADP in the presence of a proton gradient across the membrane.	0.548
BDCG_03766	BDCG_07972	A0A179TYC0	C5GU00	AGC/AKT protein kinase, variant 1.	ATP synthase subunit alpha; Produces ATP from ADP in the presence of a proton gradient across the membrane.	0.494
BDCG_04325	BDCG_00692	C5GHT9	C5G7A5	Uncharacterized protein.	AGC/RSK protein kinase.	0.418