BDCG_03997 protein (Blastomyces dermatitidis)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

BDCG_03997

Acetyl-CoA C-acetyltransferase; Belongs to the thiolase-like superfamily. Thiolase family. (399 aa)

Predicted Functional Partners:

BDCG_00817

0.990

BDCG_08693

0.972

BDCG_08529

0.928

BDCG_03204

0.928

BDCG_09022

0.928

BDCG_09023

0.928

BDCG_02437

0.925

BDCG_08174

0.925

BDCG_00987

0.922

BDCG_04450

0.922

Your Current Organism:

Blastomyces dermatitidis

NCBI taxonomy Id: 559297
Other names: Ajellomyces dermatitidis ER-3, B. dermatitidis ER-3, Blastomyces dermatitidis ER-3

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
BDCG_00817	BDCG_00987	C5G9X5	C5G7N1	3-hydroxy-3-methylglutaryl coenzyme A synthase; This enzyme condenses acetyl-CoA with acetoacetyl-CoA to form HMG-CoA, which is the substrate for HMG-CoA reductase.	Acetoacetate-CoA ligase.	0.906
BDCG_00817	BDCG_02437	C5G9X5	C5GEW8	3-hydroxy-3-methylglutaryl coenzyme A synthase; This enzyme condenses acetyl-CoA with acetoacetyl-CoA to form HMG-CoA, which is the substrate for HMG-CoA reductase.	Acyl-CoA dehydrogenase.	0.411
BDCG_00817	BDCG_03997	C5G9X5	C5GIT7	3-hydroxy-3-methylglutaryl coenzyme A synthase; This enzyme condenses acetyl-CoA with acetoacetyl-CoA to form HMG-CoA, which is the substrate for HMG-CoA reductase.	Acetyl-CoA C-acetyltransferase; Belongs to the thiolase-like superfamily. Thiolase family.	0.990
BDCG_00817	BDCG_04450	C5G9X5	C5GI64	3-hydroxy-3-methylglutaryl coenzyme A synthase; This enzyme condenses acetyl-CoA with acetoacetyl-CoA to form HMG-CoA, which is the substrate for HMG-CoA reductase.	Acetoacetate-CoA ligase.	0.941
BDCG_00817	BDCG_08174	C5G9X5	C5GUA8	3-hydroxy-3-methylglutaryl coenzyme A synthase; This enzyme condenses acetyl-CoA with acetoacetyl-CoA to form HMG-CoA, which is the substrate for HMG-CoA reductase.	Acetyl-coenzyme A synthetase.	0.590
BDCG_00817	BDCG_08693	C5G9X5	C5GWU1	3-hydroxy-3-methylglutaryl coenzyme A synthase; This enzyme condenses acetyl-CoA with acetoacetyl-CoA to form HMG-CoA, which is the substrate for HMG-CoA reductase.	3-hydroxybutyryl-CoA dehydrogenase.	0.928
BDCG_00987	BDCG_00817	C5G7N1	C5G9X5	Acetoacetate-CoA ligase.	3-hydroxy-3-methylglutaryl coenzyme A synthase; This enzyme condenses acetyl-CoA with acetoacetyl-CoA to form HMG-CoA, which is the substrate for HMG-CoA reductase.	0.906
BDCG_00987	BDCG_02437	C5G7N1	C5GEW8	Acetoacetate-CoA ligase.	Acyl-CoA dehydrogenase.	0.494
BDCG_00987	BDCG_03204	C5G7N1	C5GFL4	Acetoacetate-CoA ligase.	Acyl-coenzyme A oxidase; Belongs to the acyl-CoA oxidase family.	0.517
BDCG_00987	BDCG_03997	C5G7N1	C5GIT7	Acetoacetate-CoA ligase.	Acetyl-CoA C-acetyltransferase; Belongs to the thiolase-like superfamily. Thiolase family.	0.922
BDCG_00987	BDCG_04450	C5G7N1	C5GI64	Acetoacetate-CoA ligase.	Acetoacetate-CoA ligase.	0.883
BDCG_00987	BDCG_08529	C5G7N1	A0A179U7D3	Acetoacetate-CoA ligase.	Acyl-coenzyme A oxidase; Belongs to the acyl-CoA oxidase family.	0.517
BDCG_00987	BDCG_08693	C5G7N1	C5GWU1	Acetoacetate-CoA ligase.	3-hydroxybutyryl-CoA dehydrogenase.	0.919
BDCG_00987	BDCG_09022	C5G7N1	C5GXG2	Acetoacetate-CoA ligase.	Acyl-CoA oxidase.	0.517
BDCG_00987	BDCG_09023	C5G7N1	C5GXG3	Acetoacetate-CoA ligase.	Acyl-coenzyme A oxidase; Belongs to the acyl-CoA oxidase family.	0.517
BDCG_02437	BDCG_00817	C5GEW8	C5G9X5	Acyl-CoA dehydrogenase.	3-hydroxy-3-methylglutaryl coenzyme A synthase; This enzyme condenses acetyl-CoA with acetoacetyl-CoA to form HMG-CoA, which is the substrate for HMG-CoA reductase.	0.411
BDCG_02437	BDCG_00987	C5GEW8	C5G7N1	Acyl-CoA dehydrogenase.	Acetoacetate-CoA ligase.	0.494
BDCG_02437	BDCG_03204	C5GEW8	C5GFL4	Acyl-CoA dehydrogenase.	Acyl-coenzyme A oxidase; Belongs to the acyl-CoA oxidase family.	0.905
BDCG_02437	BDCG_03997	C5GEW8	C5GIT7	Acyl-CoA dehydrogenase.	Acetyl-CoA C-acetyltransferase; Belongs to the thiolase-like superfamily. Thiolase family.	0.925
BDCG_02437	BDCG_04450	C5GEW8	C5GI64	Acyl-CoA dehydrogenase.	Acetoacetate-CoA ligase.	0.494