BDCG_03987 protein (Blastomyces dermatitidis)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

BDCG_03987

Heat shock protein SSB1; Belongs to the heat shock protein 70 family. (614 aa)

Predicted Functional Partners:

BDCG_03436

0.981

BDCG_02173

0.972

BDCG_01809

0.954

BDCG_09432

0.948

BDCG_01593

0.946

BDCG_03313

0.946

BDCG_02557

0.945

BDCG_01449

0.938

BDCG_01323

0.931

BDCG_08103

0.931

Your Current Organism:

Blastomyces dermatitidis

NCBI taxonomy Id: 559297
Other names: Ajellomyces dermatitidis ER-3, B. dermatitidis ER-3, Blastomyces dermatitidis ER-3

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
BDCG_01323	BDCG_01449	C5G7V8	C5GCV1	DnaJ domain-containing protein.	DnaJ like subfamily A member 2, variant 1.	0.885
BDCG_01323	BDCG_01593	C5G7V8	C5GBE4	DnaJ domain-containing protein.	Heat shock protein 90.	0.888
BDCG_01323	BDCG_01809	C5G7V8	C5GBS6	DnaJ domain-containing protein.	Stress-induced-phosphoprotein 1.	0.882
BDCG_01323	BDCG_02173	C5G7V8	C5GAU2	DnaJ domain-containing protein.	DnaJ like subfamily B member 4.	0.960
BDCG_01323	BDCG_02557	C5G7V8	C5GDU7	DnaJ domain-containing protein.	60S ribosomal protein L3; Belongs to the universal ribosomal protein uL3 family.	0.458
BDCG_01323	BDCG_03313	C5G7V8	C5GGA7	DnaJ domain-containing protein.	Oxidoreductase.	0.888
BDCG_01323	BDCG_03436	C5G7V8	C5GGS1	DnaJ domain-containing protein.	Glucose-regulated protein; Belongs to the heat shock protein 70 family.	0.890
BDCG_01323	BDCG_03987	C5G7V8	C5GIU2	DnaJ domain-containing protein.	Heat shock protein SSB1; Belongs to the heat shock protein 70 family.	0.931
BDCG_01323	BDCG_09432	C5G7V8	C5GY52	DnaJ domain-containing protein.	DnaJ like subfamily C member 2.	0.646
BDCG_01449	BDCG_01323	C5GCV1	C5G7V8	DnaJ like subfamily A member 2, variant 1.	DnaJ domain-containing protein.	0.885
BDCG_01449	BDCG_01593	C5GCV1	C5GBE4	DnaJ like subfamily A member 2, variant 1.	Heat shock protein 90.	0.889
BDCG_01449	BDCG_01809	C5GCV1	C5GBS6	DnaJ like subfamily A member 2, variant 1.	Stress-induced-phosphoprotein 1.	0.892
BDCG_01449	BDCG_02173	C5GCV1	C5GAU2	DnaJ like subfamily A member 2, variant 1.	DnaJ like subfamily B member 4.	0.968
BDCG_01449	BDCG_02557	C5GCV1	C5GDU7	DnaJ like subfamily A member 2, variant 1.	60S ribosomal protein L3; Belongs to the universal ribosomal protein uL3 family.	0.483
BDCG_01449	BDCG_03313	C5GCV1	C5GGA7	DnaJ like subfamily A member 2, variant 1.	Oxidoreductase.	0.889
BDCG_01449	BDCG_03436	C5GCV1	C5GGS1	DnaJ like subfamily A member 2, variant 1.	Glucose-regulated protein; Belongs to the heat shock protein 70 family.	0.898
BDCG_01449	BDCG_03987	C5GCV1	C5GIU2	DnaJ like subfamily A member 2, variant 1.	Heat shock protein SSB1; Belongs to the heat shock protein 70 family.	0.938
BDCG_01449	BDCG_09432	C5GCV1	C5GY52	DnaJ like subfamily A member 2, variant 1.	DnaJ like subfamily C member 2.	0.639
BDCG_01593	BDCG_01323	C5GBE4	C5G7V8	Heat shock protein 90.	DnaJ domain-containing protein.	0.888
BDCG_01593	BDCG_01449	C5GBE4	C5GCV1	Heat shock protein 90.	DnaJ like subfamily A member 2, variant 1.	0.889