STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CLP1mRNA cleavage and polyadenylation factor CLP1; Required for endonucleolytic cleavage during polyadenylation- dependent pre-mRNA 3'-end formation. (595 aa)    
Predicted Functional Partners:
BDCG_05696
mRNA cleavage factor complex component Pcf11.
    
 0.998
BDCG_03880
Splicing factor, variant.
    
 0.996
BDCG_02794
Polyadenylation factor subunit CstF64.
   
 0.985
BDCG_06922
Pre-mRNA polyadenylation factor fip1.
    
 0.954
BDCG_00863
mRNA 3'-end-processing protein rna14.
    
 0.953
BDCG_01558
mRNA cleavage and polyadenylation specificity factor complex subunit.
    
 0.942
BDCG_01442
Uncharacterized protein.
    
 
 0.923
BDCG_03082
Cleavage and polyadenylation specificity factor subunit 2.
   
 0.919
BDCG_06622
C-x8-C-x5-C-x3-H type zinc finger protein, variant.
    
 0.909
BDCG_04718
Endoribonuclease ysh1.
   
 0.906
Your Current Organism:
Blastomyces dermatitidis
NCBI taxonomy Id: 559297
Other names: Ajellomyces dermatitidis ER-3, B. dermatitidis ER-3, Blastomyces dermatitidis ER-3
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.