STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
BDCG_07192DEAD/DEAH box RNA helicase. (1282 aa)    
Predicted Functional Partners:
BDCG_01402
WD domain-containing protein.
    
 0.998
BDCG_03589
Translation repressor/antiviral protein Ski3.
   
 0.998
BDCG_05396
Exosome complex component RRP4.
   
 0.951
BDCG_00117
Exosome complex component RRP45.
    
 0.950
BDCG_07631
3' exoribonuclease.
   
 0.940
BDCG_02289
3' exoribonuclease.
   
 0.928
BDCG_04434
5'-3' exoribonuclease 1; Multifunctional protein that exhibits several independent functions at different levels of the cellular processes. 5'-3' exonuclease component of the nonsense-mediated mRNA decay (NMD) which is a highly conserved mRNA degradation pathway, an RNA surveillance system whose role is to identify and rid cells of mRNA with premature termination codons and thus prevents accumulation of potentially harmful truncated proteins.
   
 
 0.909
BDCG_03358
Guanine nucleotide-binding protein subunit beta-like protein.
    
   0.905
BDCG_06285
Exosome complex subunit Rrp46.
    
 0.905
BDCG_05947
Exosome-associated family protein.
   
 0.905
Your Current Organism:
Blastomyces dermatitidis
NCBI taxonomy Id: 559297
Other names: Ajellomyces dermatitidis ER-3, B. dermatitidis ER-3, Blastomyces dermatitidis ER-3
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.