BDCG_07776 protein (Blastomyces dermatitidis)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

BDCG_07776

Transcription factor Rap1. (608 aa)

Predicted Functional Partners:

BDCG_03432

0.976

BDCG_03270

0.936

BDCG_04003

0.913

BDCG_03581

0.885

BDCG_05990

0.874

BDCG_03433

0.859

BDCG_00342

0.816

BDCG_01171

0.816

BDCG_03722

0.811

BDCG_04049

0.797

Your Current Organism:

Blastomyces dermatitidis

NCBI taxonomy Id: 559297
Other names: Ajellomyces dermatitidis ER-3, B. dermatitidis ER-3, Blastomyces dermatitidis ER-3

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
BDCG_00342	BDCG_03270	A0A179TV35	C5GG64	BZIP domain-containing protein.	Polyubiquitin.	0.963
BDCG_00342	BDCG_03432	A0A179TV35	C5GGR7	BZIP domain-containing protein.	Vacuolar protein sorting-associated protein 27; Component of the ESCRT-0 complex which is the sorting receptor for ubiquitinated cargo proteins at the multivesicular body (MVB) and recruits ESCRT-I to the MVB outer membrane.	0.947
BDCG_00342	BDCG_03433	A0A179TV35	C5GGR8	BZIP domain-containing protein.	Ubiquitin thiolesterase; Belongs to the peptidase C19 family.	0.815
BDCG_00342	BDCG_03581	A0A179TV35	C5GH66	BZIP domain-containing protein.	Ubiquitin thiolesterase, variant.	0.933
BDCG_00342	BDCG_03722	A0A179TV35	C5GFT9	BZIP domain-containing protein.	Clathrin heavy chain; Clathrin is the major protein of the polyhedral coat of coated pits and vesicles; Belongs to the clathrin heavy chain family.	0.668
BDCG_00342	BDCG_04003	A0A179TV35	C5GJ08	BZIP domain-containing protein.	Uncharacterized protein.	0.898
BDCG_00342	BDCG_05990	A0A179TV35	C5GPU6	BZIP domain-containing protein.	ESCRT-I component.	0.956
BDCG_00342	BDCG_07776	A0A179TV35	C5GTN3	BZIP domain-containing protein.	Transcription factor Rap1.	0.816
BDCG_01171	BDCG_03270	C5G8X2	C5GG64	Ubiquitin-40S ribosomal protein S27a, variant.	Polyubiquitin.	0.993
BDCG_01171	BDCG_03432	C5G8X2	C5GGR7	Ubiquitin-40S ribosomal protein S27a, variant.	Vacuolar protein sorting-associated protein 27; Component of the ESCRT-0 complex which is the sorting receptor for ubiquitinated cargo proteins at the multivesicular body (MVB) and recruits ESCRT-I to the MVB outer membrane.	0.947
BDCG_01171	BDCG_03433	C5G8X2	C5GGR8	Ubiquitin-40S ribosomal protein S27a, variant.	Ubiquitin thiolesterase; Belongs to the peptidase C19 family.	0.815
BDCG_01171	BDCG_03581	C5G8X2	C5GH66	Ubiquitin-40S ribosomal protein S27a, variant.	Ubiquitin thiolesterase, variant.	0.934
BDCG_01171	BDCG_03722	C5G8X2	C5GFT9	Ubiquitin-40S ribosomal protein S27a, variant.	Clathrin heavy chain; Clathrin is the major protein of the polyhedral coat of coated pits and vesicles; Belongs to the clathrin heavy chain family.	0.668
BDCG_01171	BDCG_04003	C5G8X2	C5GJ08	Ubiquitin-40S ribosomal protein S27a, variant.	Uncharacterized protein.	0.898
BDCG_01171	BDCG_05990	C5G8X2	C5GPU6	Ubiquitin-40S ribosomal protein S27a, variant.	ESCRT-I component.	0.956
BDCG_01171	BDCG_07776	C5G8X2	C5GTN3	Ubiquitin-40S ribosomal protein S27a, variant.	Transcription factor Rap1.	0.816
BDCG_03270	BDCG_00342	C5GG64	A0A179TV35	Polyubiquitin.	BZIP domain-containing protein.	0.963
BDCG_03270	BDCG_01171	C5GG64	C5G8X2	Polyubiquitin.	Ubiquitin-40S ribosomal protein S27a, variant.	0.993
BDCG_03270	BDCG_03432	C5GG64	C5GGR7	Polyubiquitin.	Vacuolar protein sorting-associated protein 27; Component of the ESCRT-0 complex which is the sorting receptor for ubiquitinated cargo proteins at the multivesicular body (MVB) and recruits ESCRT-I to the MVB outer membrane.	0.990
BDCG_03270	BDCG_03433	C5GG64	C5GGR8	Polyubiquitin.	Ubiquitin thiolesterase; Belongs to the peptidase C19 family.	0.970