STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
BDBG_01159zf-C3H1 domain-containing protein. (1335 aa)    
Predicted Functional Partners:
BDBG_02637
ATP-dependent RNA helicase DOB1.
    
 
 0.950
BDBG_07470
DUF455 domain-containing protein.
   
 
 0.790
BDBG_07486
Poly(A) polymerase; Polymerase that creates the 3'-poly(A) tail of mRNA's.
   
 
 0.790
BDBG_01663
Splicing factor.
   
 
 0.780
BDBG_03249
CCCH zinc finger and RRM domain-containing protein.
   
 
 0.714
BDBG_07004
DEAD/DEAH box RNA helicase.
    
 
 0.706
BDBG_07111
DEAD/DEAH box helicase, variant.
    
 
 0.665
BDBG_07005
Nonsense-mediated mRNA decay protein.
    
 
 0.665
BDBG_02376
RNP domain-containing protein.
    
 
 0.660
BDBG_02481
Exosome complex exonuclease Rrp6.
   
 
 0.599
Your Current Organism:
Blastomyces gilchristii
NCBI taxonomy Id: 559298
Other names: Ajellomyces dermatitidis SLH#14081, Ajellomyces dermatitidis SLH14081, B. gilchristii SLH14081, Blastomyces dermatitidis SLH14081, Blastomyces gilchristii SLH14081
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.