Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
BDBG_02650 | BDBG_03376 | A0A179UH55 | A0A179UJV2 | DNA-repair protein complementing XP-A cells. | AP endonuclease 1. | 0.728 |
BDBG_02650 | BDBG_04572 | A0A179UH55 | A0A179UP37 | DNA-repair protein complementing XP-A cells. | N-glycosylase/DNA lyase, variant. | 0.563 |
BDBG_02650 | BDBG_05091 | A0A179UH55 | A0A179UMT3 | DNA-repair protein complementing XP-A cells. | Exonuclease 1. | 0.705 |
BDBG_02650 | BDBG_06645 | A0A179UH55 | A0A179UUF1 | DNA-repair protein complementing XP-A cells. | Uncharacterized protein. | 0.448 |
BDBG_02650 | BDBG_06650 | A0A179UH55 | A0A179USN9 | DNA-repair protein complementing XP-A cells. | AP endonuclease 2. | 0.448 |
BDBG_02650 | FEN1 | A0A179UH55 | C5JVG7 | DNA-repair protein complementing XP-A cells. | Flap endonuclease 1; Structure-specific nuclease with 5'-flap endonuclease and 5'- 3' exonuclease activities involved in DNA replication and repair. During DNA replication, cleaves the 5'-overhanging flap structure that is generated by displacement synthesis when DNA polymerase encounters the 5'-end of a downstream Okazaki fragment. It enters the flap from the 5'-end and then tracks to cleave the flap base, leaving a nick for ligation. Also involved in the long patch base excision repair (LP-BER) pathway, by cleaving within the apurinic/apyrimidinic (AP) site- terminated flap. Acts as [...] | 0.803 |
BDBG_02650 | NTH1 | A0A179UH55 | A0A179UC15 | DNA-repair protein complementing XP-A cells. | Endonuclease III homolog; Bifunctional DNA N-glycosylase with associated apurinic/apyrimidinic (AP) lyase function that catalyzes the first step in base excision repair (BER), the primary repair pathway for the repair of oxidative DNA damage. The DNA N-glycosylase activity releases the damaged DNA base from DNA by cleaving the N-glycosidic bond, leaving an AP site. The AP lyase activity cleaves the phosphodiester bond 3' to the AP site by a beta-elimination. Primarily recognizes and repairs oxidative base damage of pyrimidines. | 0.632 |
BDBG_02650 | UNG1 | A0A179UH55 | A0A179UP85 | DNA-repair protein complementing XP-A cells. | Uracil-DNA glycosylase; Excises uracil residues from the DNA which can arise as a result of misincorporation of dUMP residues by DNA polymerase or due to deamination of cytosine; Belongs to the uracil-DNA glycosylase (UDG) superfamily. UNG family. | 0.528 |
BDBG_03376 | BDBG_02650 | A0A179UJV2 | A0A179UH55 | AP endonuclease 1. | DNA-repair protein complementing XP-A cells. | 0.728 |
BDBG_03376 | BDBG_04572 | A0A179UJV2 | A0A179UP37 | AP endonuclease 1. | N-glycosylase/DNA lyase, variant. | 0.645 |
BDBG_03376 | BDBG_05091 | A0A179UJV2 | A0A179UMT3 | AP endonuclease 1. | Exonuclease 1. | 0.441 |
BDBG_03376 | BDBG_05872 | A0A179UJV2 | A0A179UUX7 | AP endonuclease 1. | Formamidopyrimidine-DNA glycosylase. | 0.663 |
BDBG_03376 | BDBG_06645 | A0A179UJV2 | A0A179UUF1 | AP endonuclease 1. | Uncharacterized protein. | 0.762 |
BDBG_03376 | BDBG_06650 | A0A179UJV2 | A0A179USN9 | AP endonuclease 1. | AP endonuclease 2. | 0.975 |
BDBG_03376 | FEN1 | A0A179UJV2 | C5JVG7 | AP endonuclease 1. | Flap endonuclease 1; Structure-specific nuclease with 5'-flap endonuclease and 5'- 3' exonuclease activities involved in DNA replication and repair. During DNA replication, cleaves the 5'-overhanging flap structure that is generated by displacement synthesis when DNA polymerase encounters the 5'-end of a downstream Okazaki fragment. It enters the flap from the 5'-end and then tracks to cleave the flap base, leaving a nick for ligation. Also involved in the long patch base excision repair (LP-BER) pathway, by cleaving within the apurinic/apyrimidinic (AP) site- terminated flap. Acts as [...] | 0.656 |
BDBG_03376 | NTH1 | A0A179UJV2 | A0A179UC15 | AP endonuclease 1. | Endonuclease III homolog; Bifunctional DNA N-glycosylase with associated apurinic/apyrimidinic (AP) lyase function that catalyzes the first step in base excision repair (BER), the primary repair pathway for the repair of oxidative DNA damage. The DNA N-glycosylase activity releases the damaged DNA base from DNA by cleaving the N-glycosidic bond, leaving an AP site. The AP lyase activity cleaves the phosphodiester bond 3' to the AP site by a beta-elimination. Primarily recognizes and repairs oxidative base damage of pyrimidines. | 0.833 |
BDBG_03376 | UNG1 | A0A179UJV2 | A0A179UP85 | AP endonuclease 1. | Uracil-DNA glycosylase; Excises uracil residues from the DNA which can arise as a result of misincorporation of dUMP residues by DNA polymerase or due to deamination of cytosine; Belongs to the uracil-DNA glycosylase (UDG) superfamily. UNG family. | 0.721 |
BDBG_04572 | BDBG_02650 | A0A179UP37 | A0A179UH55 | N-glycosylase/DNA lyase, variant. | DNA-repair protein complementing XP-A cells. | 0.563 |
BDBG_04572 | BDBG_03376 | A0A179UP37 | A0A179UJV2 | N-glycosylase/DNA lyase, variant. | AP endonuclease 1. | 0.645 |
BDBG_04572 | BDBG_05091 | A0A179UP37 | A0A179UMT3 | N-glycosylase/DNA lyase, variant. | Exonuclease 1. | 0.445 |
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