Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
BDBG_01020 | BDBG_03854 | A0A179U910 | A0A179UIH9 | Transcription initiation factor TFIIH subunit 3, variant. | DNA-directed RNA polymerase I subunit RPA49. | 0.623 |
BDBG_01020 | BDBG_05361 | A0A179U910 | A0A179URB8 | Transcription initiation factor TFIIH subunit 3, variant. | HMG box protein. | 0.550 |
BDBG_01020 | BDBG_07248 | A0A179U910 | A0A179UXJ1 | Transcription initiation factor TFIIH subunit 3, variant. | Transcription initiation factor TFIIH subunit 1, variant. | 0.999 |
BDBG_03514 | BDBG_05361 | A0A179UHI6 | A0A179URB8 | RuvB-like helicase; DNA helicase participates in several chromatin remodeling complexes, including the SWR1 and the INO80 complexes. | HMG box protein. | 0.581 |
BDBG_03514 | BDBG_07956 | A0A179UHI6 | A0A179UXQ7 | RuvB-like helicase; DNA helicase participates in several chromatin remodeling complexes, including the SWR1 and the INO80 complexes. | Histone H2A; Belongs to the histone H2A family. | 0.957 |
BDBG_03514 | BDBG_08726 | A0A179UHI6 | A0A179V4L4 | RuvB-like helicase; DNA helicase participates in several chromatin remodeling complexes, including the SWR1 and the INO80 complexes. | Chromatin remodeling complex subunit, variant 1; Belongs to the actin family. | 0.998 |
BDBG_03514 | BDBG_17546 | A0A179UHI6 | A0A179UU65 | RuvB-like helicase; DNA helicase participates in several chromatin remodeling complexes, including the SWR1 and the INO80 complexes. | Actin-related protein 8; Probably involved in transcription regulation via its interaction with the INO80 complex, a chromatin remodeling complex. Belongs to the actin family. | 0.988 |
BDBG_03854 | BDBG_01020 | A0A179UIH9 | A0A179U910 | DNA-directed RNA polymerase I subunit RPA49. | Transcription initiation factor TFIIH subunit 3, variant. | 0.623 |
BDBG_03854 | BDBG_04517 | A0A179UIH9 | A0A179ULT2 | DNA-directed RNA polymerase I subunit RPA49. | Ribosomal DNA transcription factor Rrn3. | 0.994 |
BDBG_03854 | BDBG_05361 | A0A179UIH9 | A0A179URB8 | DNA-directed RNA polymerase I subunit RPA49. | HMG box protein. | 0.697 |
BDBG_03854 | BDBG_05404 | A0A179UIH9 | A0A179URH7 | DNA-directed RNA polymerase I subunit RPA49. | rRNA adenine N(6)-methyltransferase; Belongs to the class I-like SAM-binding methyltransferase superfamily. rRNA adenine N(6)-methyltransferase family. | 0.487 |
BDBG_03854 | BDBG_07248 | A0A179UIH9 | A0A179UXJ1 | DNA-directed RNA polymerase I subunit RPA49. | Transcription initiation factor TFIIH subunit 1, variant. | 0.634 |
BDBG_04517 | BDBG_03854 | A0A179ULT2 | A0A179UIH9 | Ribosomal DNA transcription factor Rrn3. | DNA-directed RNA polymerase I subunit RPA49. | 0.994 |
BDBG_04517 | BDBG_05361 | A0A179ULT2 | A0A179URB8 | Ribosomal DNA transcription factor Rrn3. | HMG box protein. | 0.625 |
BDBG_04517 | BDBG_05404 | A0A179ULT2 | A0A179URH7 | Ribosomal DNA transcription factor Rrn3. | rRNA adenine N(6)-methyltransferase; Belongs to the class I-like SAM-binding methyltransferase superfamily. rRNA adenine N(6)-methyltransferase family. | 0.538 |
BDBG_05361 | BDBG_01020 | A0A179URB8 | A0A179U910 | HMG box protein. | Transcription initiation factor TFIIH subunit 3, variant. | 0.550 |
BDBG_05361 | BDBG_03514 | A0A179URB8 | A0A179UHI6 | HMG box protein. | RuvB-like helicase; DNA helicase participates in several chromatin remodeling complexes, including the SWR1 and the INO80 complexes. | 0.581 |
BDBG_05361 | BDBG_03854 | A0A179URB8 | A0A179UIH9 | HMG box protein. | DNA-directed RNA polymerase I subunit RPA49. | 0.697 |
BDBG_05361 | BDBG_04517 | A0A179URB8 | A0A179ULT2 | HMG box protein. | Ribosomal DNA transcription factor Rrn3. | 0.625 |
BDBG_05361 | BDBG_05404 | A0A179URB8 | A0A179URH7 | HMG box protein. | rRNA adenine N(6)-methyltransferase; Belongs to the class I-like SAM-binding methyltransferase superfamily. rRNA adenine N(6)-methyltransferase family. | 0.559 |
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