Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
BDBG_02186 | BDBG_02655 | A0A179UD22 | A0A179UJ33 | RNA helicase. | Nucleolar RNA methyltransferase; Belongs to the class I-like SAM-binding methyltransferase superfamily. RsmB/NOP family. | 0.995 |
BDBG_02186 | BDBG_02834 | A0A179UD22 | A0A179UHB8 | RNA helicase. | Nucleolar complex-associated protein 3; Required for synthesis of 60S ribosomal subunits and the transport of pre-ribosomes from the nucleoplasm to the cytoplasm. Belongs to the CBF/MAK21 family. | 0.973 |
BDBG_02186 | BDBG_03108 | A0A179UD22 | A0A179UIY8 | RNA helicase. | ATP-dependent rRNA helicase SPB4; Belongs to the DEAD box helicase family. | 0.930 |
BDBG_02186 | BDBG_07594 | A0A179UD22 | A0A179UYK1 | RNA helicase. | Ribosome assembly protein Noc2. | 0.993 |
BDBG_02186 | BDBG_07749 | A0A179UD22 | A0A179UZ67 | RNA helicase. | 60S ribosomal subunit assembly/export protein LOC1. | 0.912 |
BDBG_02186 | BDBG_07821 | A0A179UD22 | A0A179UZE4 | RNA helicase. | rRNA processing protein. | 0.982 |
BDBG_02186 | ERB1 | A0A179UD22 | A0A179UIT2 | RNA helicase. | Ribosome biogenesis protein ERB1; Component of the NOP7 complex, which is required for maturation of the 25S and 5.8S ribosomal RNAs and formation of the 60S ribosome. | 0.999 |
BDBG_02186 | NOP7 | A0A179UD22 | A0A179UDQ0 | RNA helicase. | Pescadillo homolog; Component of the NOP7 complex, which is required for maturation of the 25S and 5.8S ribosomal RNAs and formation of the 60S ribosome. | 0.996 |
BDBG_02186 | SPB1 | A0A179UD22 | A0A179UX80 | RNA helicase. | AdoMet-dependent rRNA methyltransferase SPB1; Required for proper assembly of pre-ribosomal particles during the biogenesis of the 60S ribosomal subunit; Belongs to the class I-like SAM-binding methyltransferase superfamily. RNA methyltransferase RlmE family. SPB1 subfamily. | 0.988 |
BDBG_02186 | TIF6 | A0A179UD22 | A0A179UYM2 | RNA helicase. | Eukaryotic translation initiation factor 6; Binds to the 60S ribosomal subunit and prevents its association with the 40S ribosomal subunit to form the 80S initiation complex in the cytoplasm. Is also involved in ribosome biogenesis. Associates with pre-60S subunits in the nucleus and is involved in its nuclear export; Belongs to the eIF-6 family. | 0.954 |
BDBG_02655 | BDBG_02186 | A0A179UJ33 | A0A179UD22 | Nucleolar RNA methyltransferase; Belongs to the class I-like SAM-binding methyltransferase superfamily. RsmB/NOP family. | RNA helicase. | 0.995 |
BDBG_02655 | BDBG_02834 | A0A179UJ33 | A0A179UHB8 | Nucleolar RNA methyltransferase; Belongs to the class I-like SAM-binding methyltransferase superfamily. RsmB/NOP family. | Nucleolar complex-associated protein 3; Required for synthesis of 60S ribosomal subunits and the transport of pre-ribosomes from the nucleoplasm to the cytoplasm. Belongs to the CBF/MAK21 family. | 0.992 |
BDBG_02655 | BDBG_03108 | A0A179UJ33 | A0A179UIY8 | Nucleolar RNA methyltransferase; Belongs to the class I-like SAM-binding methyltransferase superfamily. RsmB/NOP family. | ATP-dependent rRNA helicase SPB4; Belongs to the DEAD box helicase family. | 0.976 |
BDBG_02655 | BDBG_07594 | A0A179UJ33 | A0A179UYK1 | Nucleolar RNA methyltransferase; Belongs to the class I-like SAM-binding methyltransferase superfamily. RsmB/NOP family. | Ribosome assembly protein Noc2. | 0.997 |
BDBG_02655 | BDBG_07749 | A0A179UJ33 | A0A179UZ67 | Nucleolar RNA methyltransferase; Belongs to the class I-like SAM-binding methyltransferase superfamily. RsmB/NOP family. | 60S ribosomal subunit assembly/export protein LOC1. | 0.889 |
BDBG_02655 | BDBG_07821 | A0A179UJ33 | A0A179UZE4 | Nucleolar RNA methyltransferase; Belongs to the class I-like SAM-binding methyltransferase superfamily. RsmB/NOP family. | rRNA processing protein. | 0.994 |
BDBG_02655 | ERB1 | A0A179UJ33 | A0A179UIT2 | Nucleolar RNA methyltransferase; Belongs to the class I-like SAM-binding methyltransferase superfamily. RsmB/NOP family. | Ribosome biogenesis protein ERB1; Component of the NOP7 complex, which is required for maturation of the 25S and 5.8S ribosomal RNAs and formation of the 60S ribosome. | 0.997 |
BDBG_02655 | NOP7 | A0A179UJ33 | A0A179UDQ0 | Nucleolar RNA methyltransferase; Belongs to the class I-like SAM-binding methyltransferase superfamily. RsmB/NOP family. | Pescadillo homolog; Component of the NOP7 complex, which is required for maturation of the 25S and 5.8S ribosomal RNAs and formation of the 60S ribosome. | 0.991 |
BDBG_02655 | SPB1 | A0A179UJ33 | A0A179UX80 | Nucleolar RNA methyltransferase; Belongs to the class I-like SAM-binding methyltransferase superfamily. RsmB/NOP family. | AdoMet-dependent rRNA methyltransferase SPB1; Required for proper assembly of pre-ribosomal particles during the biogenesis of the 60S ribosomal subunit; Belongs to the class I-like SAM-binding methyltransferase superfamily. RNA methyltransferase RlmE family. SPB1 subfamily. | 0.997 |
BDBG_02655 | TIF6 | A0A179UJ33 | A0A179UYM2 | Nucleolar RNA methyltransferase; Belongs to the class I-like SAM-binding methyltransferase superfamily. RsmB/NOP family. | Eukaryotic translation initiation factor 6; Binds to the 60S ribosomal subunit and prevents its association with the 40S ribosomal subunit to form the 80S initiation complex in the cytoplasm. Is also involved in ribosome biogenesis. Associates with pre-60S subunits in the nucleus and is involved in its nuclear export; Belongs to the eIF-6 family. | 0.981 |
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