STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
BDBG_09194C2H2-type domain-containing protein. (213 aa)    
Predicted Functional Partners:
BDBG_01015
Pre-mRNA-splicing factor ATP-dependent RNA helicase PRP43.
    
 0.708
BDBG_06531
RNA helicase.
    
 0.646
BDBG_05072
U3 small nucleolar RNA-associated protein 22.
    
 
 0.623
BDBG_02473
rRNA processing protein Utp6.
    
 
 0.618
RRP36
rRNA biogenesis protein RRP36; Component of the 90S pre-ribosome involved in the maturation of rRNAs. Required for early cleavages of the pre-RNAs in the 40S ribosomal subunit maturation pathway (By similarity).
   
   0.617
BDBG_00251
Sas10/Utp3 family protein.
    
   0.615
BDBG_00628
KRR1 small subunit processome component; Required for 40S ribosome biogenesis. Involved in nucleolar processing of pre-18S ribosomal RNA and ribosome assembly.
    
   0.615
BDBG_01004
rRNA maturation protein.
    
   0.615
BDBG_05138
Nuclear protein.
    
   0.615
BDBG_08130
U3 small nucleolar ribonucleoprotein subunit.
    
   0.615
Your Current Organism:
Blastomyces gilchristii
NCBI taxonomy Id: 559298
Other names: Ajellomyces dermatitidis SLH#14081, Ajellomyces dermatitidis SLH14081, B. gilchristii SLH14081, Blastomyces dermatitidis SLH14081, Blastomyces gilchristii SLH14081
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.