TERG_03244 protein (Trichophyton rubrum) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

TERG_03244

WD_REPEATS_REGION domain-containing protein. (614 aa)

Predicted Functional Partners:

TERG_06637

0.945

TERG_06201

0.909

TERG_03259

0.900

TERG_03260

0.900

TERG_04142

0.898

TERG_05115

0.890

TERG_03243

0.889

TERG_00808

0.887

TERG_03902

0.806

TERG_01374

0.794

Your Current Organism:

Trichophyton rubrum

NCBI taxonomy Id: 559305
Other names: T. rubrum CBS 118892, Trichophyton rubrum CBS 118892

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
TERG_00808	TERG_03244	F2SDA8	F2SJN6	Actin-like protein; Belongs to the actin family.	WD_REPEATS_REGION domain-containing protein.	0.887
TERG_00808	TERG_03902	F2SDA8	F2SPA3	Actin-like protein; Belongs to the actin family.	Uncharacterized protein; Belongs to the actin family.	0.955
TERG_00808	TERG_04142	F2SDA8	F2SPZ4	Actin-like protein; Belongs to the actin family.	ADF-H domain-containing protein; Belongs to the actin-binding proteins ADF family.	0.962
TERG_00808	TERG_05115	F2SDA8	F2SR98	Actin-like protein; Belongs to the actin family.	Uncharacterized protein; Belongs to the actin family.	0.954
TERG_00808	TERG_06201	F2SDA8	F2SUQ3	Actin-like protein; Belongs to the actin family.	F-actin-capping protein subunit beta; F-actin-capping proteins bind in a Ca(2+)-independent manner to the fast growing ends of actin filaments (barbed end) thereby blocking the exchange of subunits at these ends. Unlike other capping proteins (such as gelsolin and severin), these proteins do not sever actin filaments.	0.948
TERG_01374	TERG_03244	F2SC43	F2SJN6	Uncharacterized protein.	WD_REPEATS_REGION domain-containing protein.	0.794
TERG_01374	TERG_03902	F2SC43	F2SPA3	Uncharacterized protein.	Uncharacterized protein; Belongs to the actin family.	0.819
TERG_01374	TERG_04142	F2SC43	F2SPZ4	Uncharacterized protein.	ADF-H domain-containing protein; Belongs to the actin-binding proteins ADF family.	0.830
TERG_01374	TERG_05115	F2SC43	F2SR98	Uncharacterized protein.	Uncharacterized protein; Belongs to the actin family.	0.820
TERG_01374	TERG_06201	F2SC43	F2SUQ3	Uncharacterized protein.	F-actin-capping protein subunit beta; F-actin-capping proteins bind in a Ca(2+)-independent manner to the fast growing ends of actin filaments (barbed end) thereby blocking the exchange of subunits at these ends. Unlike other capping proteins (such as gelsolin and severin), these proteins do not sever actin filaments.	0.811
TERG_03243	TERG_03244	F2SJN5	F2SJN6	Ribosomal protein S18.	WD_REPEATS_REGION domain-containing protein.	0.889
TERG_03243	TERG_03259	F2SJN5	F2SJQ1	Ribosomal protein S18.	Uncharacterized protein.	0.800
TERG_03243	TERG_03260	F2SJN5	F2SJQ2	Ribosomal protein S18.	Uncharacterized protein.	0.408
TERG_03244	TERG_00808	F2SJN6	F2SDA8	WD_REPEATS_REGION domain-containing protein.	Actin-like protein; Belongs to the actin family.	0.887
TERG_03244	TERG_01374	F2SJN6	F2SC43	WD_REPEATS_REGION domain-containing protein.	Uncharacterized protein.	0.794
TERG_03244	TERG_03243	F2SJN6	F2SJN5	WD_REPEATS_REGION domain-containing protein.	Ribosomal protein S18.	0.889
TERG_03244	TERG_03259	F2SJN6	F2SJQ1	WD_REPEATS_REGION domain-containing protein.	Uncharacterized protein.	0.900
TERG_03244	TERG_03260	F2SJN6	F2SJQ2	WD_REPEATS_REGION domain-containing protein.	Uncharacterized protein.	0.900
TERG_03244	TERG_03902	F2SJN6	F2SPA3	WD_REPEATS_REGION domain-containing protein.	Uncharacterized protein; Belongs to the actin family.	0.806
TERG_03244	TERG_04142	F2SJN6	F2SPZ4	WD_REPEATS_REGION domain-containing protein.	ADF-H domain-containing protein; Belongs to the actin-binding proteins ADF family.	0.898