TERG_05946 protein (Trichophyton rubrum) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

TERG_05946

Uncharacterized protein. (389 aa)

Predicted Functional Partners:

TERG_04485

0.871

TERG_08611

0.571

TERG_04596

0.493

TERG_04256

0.484

TERG_01228

0.478

TERG_04197

0.476

TERG_01239

0.458

TERG_07904

0.458

TERG_03509

0.457

TERG_07168

0.457

Your Current Organism:

Trichophyton rubrum

NCBI taxonomy Id: 559305
Other names: T. rubrum CBS 118892, Trichophyton rubrum CBS 118892

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
TERG_01228	TERG_04197	F2SFP0	F2SMN9	Protein transport protein sec16; Involved in the initiation of assembly of the COPII coat required for the formation of transport vesicles from the endoplasmic reticulum (ER) and the selection of cargo molecules. Also involved in autophagy; Belongs to the SEC16 family.	Uncharacterized protein.	0.673
TERG_01228	TERG_05946	F2SFP0	F2SS99	Protein transport protein sec16; Involved in the initiation of assembly of the COPII coat required for the formation of transport vesicles from the endoplasmic reticulum (ER) and the selection of cargo molecules. Also involved in autophagy; Belongs to the SEC16 family.	Uncharacterized protein.	0.478
TERG_01239	TERG_04485	F2SFV2	F2SNH6	Uncharacterized protein.	Uncharacterized protein.	0.862
TERG_01239	TERG_05946	F2SFV2	F2SS99	Uncharacterized protein.	Uncharacterized protein.	0.458
TERG_03509	TERG_05946	F2SKH2	F2SS99	PAPA-1 domain-containing protein.	Uncharacterized protein.	0.457
TERG_04197	TERG_01228	F2SMN9	F2SFP0	Uncharacterized protein.	Protein transport protein sec16; Involved in the initiation of assembly of the COPII coat required for the formation of transport vesicles from the endoplasmic reticulum (ER) and the selection of cargo molecules. Also involved in autophagy; Belongs to the SEC16 family.	0.673
TERG_04197	TERG_05946	F2SMN9	F2SS99	Uncharacterized protein.	Uncharacterized protein.	0.476
TERG_04256	TERG_05946	F2SMU6	F2SS99	Uncharacterized protein.	Uncharacterized protein.	0.484
TERG_04485	TERG_01239	F2SNH6	F2SFV2	Uncharacterized protein.	Uncharacterized protein.	0.862
TERG_04485	TERG_05946	F2SNH6	F2SS99	Uncharacterized protein.	Uncharacterized protein.	0.871
TERG_04485	TERG_07904	F2SNH6	F2SZD3	Uncharacterized protein.	Tubulin beta chain; Tubulin is the major constituent of microtubules. It binds two moles of GTP, one at an exchangeable site on the beta chain and one at a non-exchangeable site on the alpha chain.	0.862
TERG_04596	TERG_05946	F2SNT6	F2SS99	SUMO-conjugating enzyme ubc9; Belongs to the ubiquitin-conjugating enzyme family.	Uncharacterized protein.	0.493
TERG_04596	TERG_08611	F2SNT6	F2T1C2	SUMO-conjugating enzyme ubc9; Belongs to the ubiquitin-conjugating enzyme family.	E3 ubiquitin ligase complex SCF subunit sconC; Belongs to the SKP1 family.	0.730
TERG_05946	TERG_01228	F2SS99	F2SFP0	Uncharacterized protein.	Protein transport protein sec16; Involved in the initiation of assembly of the COPII coat required for the formation of transport vesicles from the endoplasmic reticulum (ER) and the selection of cargo molecules. Also involved in autophagy; Belongs to the SEC16 family.	0.478
TERG_05946	TERG_01239	F2SS99	F2SFV2	Uncharacterized protein.	Uncharacterized protein.	0.458
TERG_05946	TERG_03509	F2SS99	F2SKH2	Uncharacterized protein.	PAPA-1 domain-containing protein.	0.457
TERG_05946	TERG_04197	F2SS99	F2SMN9	Uncharacterized protein.	Uncharacterized protein.	0.476
TERG_05946	TERG_04256	F2SS99	F2SMU6	Uncharacterized protein.	Uncharacterized protein.	0.484
TERG_05946	TERG_04485	F2SS99	F2SNH6	Uncharacterized protein.	Uncharacterized protein.	0.871
TERG_05946	TERG_04596	F2SS99	F2SNT6	Uncharacterized protein.	SUMO-conjugating enzyme ubc9; Belongs to the ubiquitin-conjugating enzyme family.	0.493