TERG_06270 protein (Trichophyton rubrum) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

TERG_06270

Uncharacterized protein. (145 aa)

Predicted Functional Partners:

TERG_00741

0.875

TERG_00142

0.692

TERG_03553

0.673

TERG_08611

0.643

TERG_12247

0.406

TERG_12246

0.406

Your Current Organism:

Trichophyton rubrum

NCBI taxonomy Id: 559305
Other names: T. rubrum CBS 118892, Trichophyton rubrum CBS 118892

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
TERG_00142	TERG_00741	F2SE12	F2SD41	Uncharacterized protein.	WD_REPEATS_REGION domain-containing protein.	0.859
TERG_00142	TERG_03553	F2SE12	F2SKS3	Uncharacterized protein.	Vacuolar proton pump subunit B; Non-catalytic subunit of the peripheral V1 complex of vacuolar ATPase; Belongs to the ATPase alpha/beta chains family.	0.999
TERG_00142	TERG_06270	F2SE12	F2SUX4	Uncharacterized protein.	Uncharacterized protein.	0.692
TERG_00142	TERG_12246	F2SE12	A0A080WNN5	Uncharacterized protein.	Uncharacterized protein.	0.987
TERG_00142	TERG_12247	F2SE12	A0A080WH70	Uncharacterized protein.	V-ATPase_H_C domain-containing protein.	0.987
TERG_00741	TERG_00142	F2SD41	F2SE12	WD_REPEATS_REGION domain-containing protein.	Uncharacterized protein.	0.859
TERG_00741	TERG_03553	F2SD41	F2SKS3	WD_REPEATS_REGION domain-containing protein.	Vacuolar proton pump subunit B; Non-catalytic subunit of the peripheral V1 complex of vacuolar ATPase; Belongs to the ATPase alpha/beta chains family.	0.927
TERG_00741	TERG_06270	F2SD41	F2SUX4	WD_REPEATS_REGION domain-containing protein.	Uncharacterized protein.	0.875
TERG_00741	TERG_08611	F2SD41	F2T1C2	WD_REPEATS_REGION domain-containing protein.	E3 ubiquitin ligase complex SCF subunit sconC; Belongs to the SKP1 family.	0.910
TERG_00741	TERG_12246	F2SD41	A0A080WNN5	WD_REPEATS_REGION domain-containing protein.	Uncharacterized protein.	0.432
TERG_00741	TERG_12247	F2SD41	A0A080WH70	WD_REPEATS_REGION domain-containing protein.	V-ATPase_H_C domain-containing protein.	0.432
TERG_03553	TERG_00142	F2SKS3	F2SE12	Vacuolar proton pump subunit B; Non-catalytic subunit of the peripheral V1 complex of vacuolar ATPase; Belongs to the ATPase alpha/beta chains family.	Uncharacterized protein.	0.999
TERG_03553	TERG_00741	F2SKS3	F2SD41	Vacuolar proton pump subunit B; Non-catalytic subunit of the peripheral V1 complex of vacuolar ATPase; Belongs to the ATPase alpha/beta chains family.	WD_REPEATS_REGION domain-containing protein.	0.927
TERG_03553	TERG_06270	F2SKS3	F2SUX4	Vacuolar proton pump subunit B; Non-catalytic subunit of the peripheral V1 complex of vacuolar ATPase; Belongs to the ATPase alpha/beta chains family.	Uncharacterized protein.	0.673
TERG_03553	TERG_12246	F2SKS3	A0A080WNN5	Vacuolar proton pump subunit B; Non-catalytic subunit of the peripheral V1 complex of vacuolar ATPase; Belongs to the ATPase alpha/beta chains family.	Uncharacterized protein.	0.993
TERG_03553	TERG_12247	F2SKS3	A0A080WH70	Vacuolar proton pump subunit B; Non-catalytic subunit of the peripheral V1 complex of vacuolar ATPase; Belongs to the ATPase alpha/beta chains family.	V-ATPase_H_C domain-containing protein.	0.993
TERG_06270	TERG_00142	F2SUX4	F2SE12	Uncharacterized protein.	Uncharacterized protein.	0.692
TERG_06270	TERG_00741	F2SUX4	F2SD41	Uncharacterized protein.	WD_REPEATS_REGION domain-containing protein.	0.875
TERG_06270	TERG_03553	F2SUX4	F2SKS3	Uncharacterized protein.	Vacuolar proton pump subunit B; Non-catalytic subunit of the peripheral V1 complex of vacuolar ATPase; Belongs to the ATPase alpha/beta chains family.	0.673
TERG_06270	TERG_08611	F2SUX4	F2T1C2	Uncharacterized protein.	E3 ubiquitin ligase complex SCF subunit sconC; Belongs to the SKP1 family.	0.643